Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02218 ATGTCCGTACAGTCACCCCTGAAGCTCCAACATCTTAAGGTGGCAACTGAAAGCTCCAATTTTGAAGGTGACCCACCATGCAAAACCACCAAAAAACCCCAAAACCGGTTGAAGCTCCTCCGAATCATACTCACCGACCACGACGCCACCGACTCTGATTCTTCCGGCGAAGATGAAAACCCGCAAAAACCCTCCAAGCTTCGAAGGGTAAAAAGGGAAATCATTACCCATATCAGCATGAACCTTCCCTTTGTTTCAGATTCTCCAACCCCTTCACCTTCTTCTTCATCTTCCTTCCCTGACCCGACCCGATTCAAAAGACCCAAGAAATCCCCCGCCGGAGCCATAGCCTCTCGCAGCCGGGGGAAGTTCCGGGGAGTTCGCCAGAGACCTTGGGGAAGGTGGACCGCCGAGATCCGTGACCCGACACGGAGGAAACGGCTTTGGTTAGGAACCTTCGACACGGCGGAGGAAGCCGCCGCCGTTTACGACGATGCCGCCGTGAAACTTAAGGGACCCAACGCTGTCACCAACTTCCCCCACCGAGCCGTCGAGAAGAAAGAGGTGGCGGCGGAGGTTTTCTCCGGCGACGGTTTCGCGTCGCCGAAGTCCGTTCTGGCTTATTACGACGGCGAAACGACTCCGTTCGACGGTTTCCGTTACGGAGCGGTGGATGCACTCGGGTTTGATATAGACGTGCCGTTAAGTCTGACGGACGTTAACTCGGTGCTAACGAGTCAGCGGTTTGGGAAAGAGGAGTTCGGCGAGTTTGACCCGGACGAGTTCTTGACGTGGCCCAGTTAA 804 0.5535 MSVQSPLKLQHLKVATESSNFEGDPPCKTTKKPQNRLKLLRIILTDHDATDSDSSGEDENPQKPSKLRRVKREIITHISMNLPFVSDSPTPSPSSSSSFPDPTRFKRPKKSPAGAIASRSRGKFRGVRQRPWGRWTAEIRDPTRRKRLWLGTFDTAEEAAAVYDDAAVKLKGPNAVTNFPHRAVEKKEVAAEVFSGDGFASPKSVLAYYDGETTPFDGFRYGAVDALGFDIDVPLSLTDVNSVLTSQRFGKEEFGEFDPDEFLTWPS* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02218 267 MobiDBLite consensus disorder prediction 81 102 - -
Rops11g02218 267 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Rops11g02218 267 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Rops11g02218 267 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677
Rops11g02218 267 PIRSF PTI6 7 267 IPR017392 GO:0003700
Rops11g02218 267 Gene3D AP2/ERF domain 122 182 IPR036955 GO:0003700|GO:0006355
Rops11g02218 267 MobiDBLite consensus disorder prediction 81 123 - -
Rops11g02218 267 MobiDBLite consensus disorder prediction 1 68 - -
Rops11g02218 267 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Rops11g02218 267 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Rops11g02218 267 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Rops11g02218 267 CDD AP2 123 181 IPR001471 GO:0003700|GO:0006355
Rops11g02218 267 MobiDBLite consensus disorder prediction 41 68 - -
Rops11g02218 267 MobiDBLite consensus disorder prediction 1 25 - -
Rops11g02218 267 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 38 185 - -
Rops11g02218 267 FunFam Ethylene-responsive transcription factor 2 123 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02218 Rops-Chr11 37001053 37002797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02218 38 208 AP2-EREBP Transcription Factor Family AT4G27950 41.176 5.90e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops11g02218 AP2 7.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02218 K13434 - gmx:102660028 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02218 11 37001053 37002797 Rops11g02218 11 37001053 37002797 ECH