Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02185 ATGGGAAGAAGACCAGCGAGGTGTTACCGGCAAATAAAGAACAAACCCTACCCGAAGTCACGGTTCTGCCGTGGCGTTCCGGACCCTAAGATACGAATCTACGACGTCGGAATGAAAAGGAAAGGCGTGGACGAGTTCCCATTCTGCGTTCACCTGGTTTCATGGGAGAAAGAGAACGTTTCCAGCGAAGCTCTAGAAGCTGCTAGAATCGCATGCAACAAGTACATGTCGAAATTCGCTGGAAAAGACGCGTTTCACCTGCGCGTGAGGGTGCATCCCTTCCACGTGCTTCGAATCAACAAGATGCTATCGTGCGCCGGTGCTGATAGGTTACAAACGGGGATGAGAGGAGCGTTTGGGAAACCTCAAGGGACTTGTGCTAGGGTTAGTATTGGTCAAGTGCTTCTATCAGTGAGGTGTAAGGATAGTAATGGAAATCATGCTCAGGAAGCTCTGCGTCGTGCTAAGTTCAAGTTCCCTGGTCGCCAGAAAATAATTATTAGCAGAAAGTGGGGATTTACTAAGTTGAGCCGAACTGAGTATTTGAAGTTGAAGTCTGAGAACAAAATTGTGCTGGATGGGGTCAATTGCAAGGTTCTTGGGTGCCATGGACCTTTGGCGGATCGTAAGCCCGGAAGAGCTTTCCTTCCAGCTACTGCTTAG 663 0.4902 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDSNGNHAQEALRRAKFKFPGRQKIIISRKWGFTKLSRTEYLKLKSENKIVLDGVNCKVLGCHGPLADRKPGRAFLPATA* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02185 220 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Rops11g02185 220 FunFam 60S ribosomal protein L10 1 206 - -
Rops11g02185 220 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Rops11g02185 220 Gene3D Ribosomal protein L10e/L16 1 215 IPR036920 GO:0003735|GO:0005840|GO:0006412
Rops11g02185 220 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Rops11g02185 220 NCBIfam 50S ribosomal protein L16 1 175 IPR001197 GO:0003735|GO:0005840|GO:0006412
Rops11g02185 220 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
Rops11g02185 220 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Rops11g02185 220 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02185 Rops-Chr11 36350799 36353190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02185 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.455 5.04e-142 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02185 K02866 - nnu:104612975 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02185 11 36350799 36353190 Rops11g02185 11 36350799 36353190 ECH