Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops11g02185 | ATGGGAAGAAGACCAGCGAGGTGTTACCGGCAAATAAAGAACAAACCCTACCCGAAGTCACGGTTCTGCCGTGGCGTTCCGGACCCTAAGATACGAATCTACGACGTCGGAATGAAAAGGAAAGGCGTGGACGAGTTCCCATTCTGCGTTCACCTGGTTTCATGGGAGAAAGAGAACGTTTCCAGCGAAGCTCTAGAAGCTGCTAGAATCGCATGCAACAAGTACATGTCGAAATTCGCTGGAAAAGACGCGTTTCACCTGCGCGTGAGGGTGCATCCCTTCCACGTGCTTCGAATCAACAAGATGCTATCGTGCGCCGGTGCTGATAGGTTACAAACGGGGATGAGAGGAGCGTTTGGGAAACCTCAAGGGACTTGTGCTAGGGTTAGTATTGGTCAAGTGCTTCTATCAGTGAGGTGTAAGGATAGTAATGGAAATCATGCTCAGGAAGCTCTGCGTCGTGCTAAGTTCAAGTTCCCTGGTCGCCAGAAAATAATTATTAGCAGAAAGTGGGGATTTACTAAGTTGAGCCGAACTGAGTATTTGAAGTTGAAGTCTGAGAACAAAATTGTGCTGGATGGGGTCAATTGCAAGGTTCTTGGGTGCCATGGACCTTTGGCGGATCGTAAGCCCGGAAGAGCTTTCCTTCCAGCTACTGCTTAG | 663 | 0.4902 | MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDSNGNHAQEALRRAKFKFPGRQKIIISRKWGFTKLSRTEYLKLKSENKIVLDGVNCKVLGCHGPLADRKPGRAFLPATA* | 221 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops11g02185 | 220 | CDD | Ribosomal_L16_L10e | 41 | 166 | IPR016180 | GO:0003735|GO:0005840|GO:0006412 | |
Rops11g02185 | 220 | FunFam | 60S ribosomal protein L10 | 1 | 206 | - | - | |
Rops11g02185 | 220 | ProSitePatterns | Ribosomal protein L10e signature. | 108 | 129 | IPR018255 | GO:0003735|GO:0005840|GO:0006412 | |
Rops11g02185 | 220 | Gene3D | Ribosomal protein L10e/L16 | 1 | 215 | IPR036920 | GO:0003735|GO:0005840|GO:0006412 | |
Rops11g02185 | 220 | Pfam | Ribosomal protein L16p/L10e | 12 | 166 | IPR016180 | GO:0003735|GO:0005840|GO:0006412 | |
Rops11g02185 | 220 | NCBIfam | 50S ribosomal protein L16 | 1 | 175 | IPR001197 | GO:0003735|GO:0005840|GO:0006412 | |
Rops11g02185 | 220 | PANTHER | 60S RIBOSOMAL PROTEIN L10 | 1 | 213 | IPR001197 | GO:0003735|GO:0005840|GO:0006412 | |
Rops11g02185 | 220 | PIRSF | RPL10a_RPL10e | 1 | 182 | IPR001197 | GO:0003735|GO:0005840|GO:0006412 | |
Rops11g02185 | 220 | SUPERFAMILY | Ribosomal protein L16p/L10e | 4 | 173 | IPR036920 | GO:0003735|GO:0005840|GO:0006412 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops11g02185 | Rops-Chr11 | 36350799 | 36353190 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops11g02185 | 1 | 220 | Cytoplasmic Ribosomal Protein Gene Family | AT1G66580 | 85.455 | 5.04e-142 | 394 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops11g02185 | K02866 | - | nnu:104612975 | 432.95 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops11g02185 | 11 | 36350799 | 36353190 | Rops11g02185 | 11 | 36350799 | 36353190 | ECH |