Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02178 ATGAAGAGGCTCAATAACTCAGATACCATGGCAACTTTGCTTCCCATGTGCCCATCAAAAGGGGTGGATCAGAGGAATGAAACTATAGGTTACAGTGAAGAATTTCAGGCAATGTTAGATAGATTGGACCAAGAAGACAGCTATGAAGATGCTAGTTTGGTTTTGGAGAAGAAAAGGAGACTCAGTTTTGATCAGGTCAAAGCCTTAGAGAGGAGTTTTGAGGTTGACAACAAGCTAGAGCCAGAGCGCAAGGTGAAGTTAGCTGAAGAAGTAGGCTTGCAACCAAGACAAGTTGCTATTTGGTTCCAAAACCGTAGAGCACGTTGGAAAACCAAGCAATTGGAGAGAGATTATGGTATTCTCAAGTCCAATTTTGATGTTCTTAAGGTTGAGTATAATAACCTTGAGCAAGAGAATGAGGCTCTTACTACAAAGCTAAAAGAGTTGAAAGCAAAATTGTTTAGAGTTGAAAGAAATGAGTCAGGAAAGGAAGAATATTCTCCCATTTCAGAGGTAAGAGACAGAGGAGCATCAGAGAGCAATTCAAATGGTGTGGTTAAGGAAGAAAGCAATGTTGATTCTCCTTTCTGTTTCAATGGATCTTTGCCAAGTTCAAGTTCAAGTTCAATGATAAACTGGCTTCACCAATCTGATTCAAGAGGGTCTCTTAATAGAACATTTCAGAACCACTTTATGAGAATGGAGGAGCAGAGTTTCTTTAGTATGAATGAATTCTCAAACTTCTTTTCTGTGGATCAATCCCCTACCCTGTAA 774 0.3953 MKRLNNSDTMATLLPMCPSKGVDQRNETIGYSEEFQAMLDRLDQEDSYEDASLVLEKKRRLSFDQVKALERSFEVDNKLEPERKVKLAEEVGLQPRQVAIWFQNRRARWKTKQLERDYGILKSNFDVLKVEYNNLEQENEALTTKLKELKAKLFRVERNESGKEEYSPISEVRDRGASESNSNGVVKEESNVDSPFCFNGSLPSSSSSSMINWLHQSDSRGSLNRTFQNHFMRMEEQSFFSMNEFSNFFSVDQSPTL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02178 257 Gene3D - 56 119 - -
Rops11g02178 257 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Rops11g02178 257 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Rops11g02178 257 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Rops11g02178 257 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Rops11g02178 257 SUPERFAMILY Homeodomain-like 55 114 IPR009057 -
Rops11g02178 257 SMART HOX_1 55 116 IPR001356 GO:0003677
Rops11g02178 257 Coils Coil 118 159 - -
Rops11g02178 257 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Rops11g02178 257 FunFam Homeobox-leucine zipper protein HOX13 60 109 - -
Rops11g02178 257 MobiDBLite consensus disorder prediction 165 189 - -
Rops11g02178 257 MobiDBLite consensus disorder prediction 174 189 - -
Rops11g02178 257 CDD homeodomain 57 113 IPR001356 GO:0003677
Rops11g02178 257 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 200 IPR045224 GO:0003700
Rops11g02178 257 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02178 Rops-Chr11 36138899 36140356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02178 20 153 Homeobox Transcription Factor Family AT5G65310 58.621 8.31e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops11g02178 Homeodomain 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02178 K09338 - fve:101303707 248.825