Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02163 ATGGACTCCAAGTCAAAATTTTCAGATATGCTACTATTCTGGAGATCCTTCCTCCCGCGACCGTTTTGGGCCTTGTTGGGTCGTCGGTCATCTTCCGATTTGAGTCAAGGAGATGCAACTTCCAGTTCTTCCATGCATTCCAATAGCATCCTAAACTATAAATACGATGTGTTTATCAGTTTCAGAGGTCCCGATACCCGCAACACTTTCGTTGATCATCTTTACAATCATCTCATCCGTAAAGGTATTTTTGCCTTCAAGGATGACAAAAGGCTCCAGAAAGGAGAATCCATTTCACCCCAGCTTATACAAGCAATTAAAAGTTCACGGGTTTCTATTGTTGTCTTCTCAAAAACATATGCTCAGTCGACATGGTGTTTGGATGAAATGGCTACAATTGCAGAATGCCATCAAGAATTGAAACAAACTGTTTTCCCTGTTTTCTATGATGTGGATCCATCTCATGTACGAAACCAGAATGGGGTGTACGAGAATGCCTTTGTTTTACACACATTGAAATACGAAGGCAAGGTTGATCGATGGAAGAGAGCTTTGACGGGTTTGGCTGGATTAGTTGGTTGGGATGTCAGGAACAACTTACGGTATCTTCAATGGCATGGTTATCCTTTTGCTTCTTTGCCTTTCCAATTTGAGCCGTATCGTCTTGTGGAATTGAATATGCCTTATAGCAACATCCAACAACTATGGGAAGGTCGCAAGGATCTCCCCTATTTGAAAAGCGTGGATCTGAGCAACTCCAAATATCTTATGGAGACACCAAATTTTTCAGGGAGCCGAAGAGTTGAGCGGCTAGATCTTACAGGGTGCATAAACCTATCTTGGGTCCATCCATCAATTGGACTTCTTGAAAAACTTGCTTTCTTGAGTTTGGAAGGCTGTAGCAGTTTGGTCAGCCTTGATCTTGGCACTACAGAAAATTTATATTCTTTGAAAGTTCTTCACCTCTCTGGCTGCACTAAACTTGGAATTACACCAGATTTTACAAAGGTCTCAAACCTTGAGTACCTTGATATTGATCAATGTATGAGTTTATCAACCGTTGATCAATCTATTGGAGATCTTACAAAGCTTAAATTCTTGAGTTTGAGAGACTGCACAAATCTCGTCAGCATACCCGAAAGTGTCAATTCTATGACATCTCTTGTAACTCTAGATTTATGCGGCTGCCTAAAAATAGAGAATCTACCCTTGCTTGGAAAGAAATTCAGGTCTTCTTACTATCTGGGTTCTTTGATTTTTTTGGACTTAAGCTTTTGCAATCTAAGTAAAGTCCCTGAAGCTATTGGATTGTTAAGGTGTTTAGAAAGGCTAAATTTAGAAGGAAACAACTTTTTTTCGTTACCGTCTTCCATGGGGCGTCTTTCCAGGCTAGCATATTTAAACTTGGCGCATTGCAAGAGGCTTCAATATTTGCCTGATCTACAATTGTGTGCTACTGCTTCATCAGGGGGAAGGTATTTTAAAACCGTATCTGGATCTCATCATCATAGGTCAGGGTTATATGTTTTCAACTGTTCCTTCTTGGAGATCCCAGAAGAAGGTCCAAATTTGGCACTTTTGTGGTTAGAAAGATTAATAAAGAATCCTTGTCACTTCCGGTGTGGCTTTGACATTGTCGTTCCTGGGAACATAATTCCACAATGGTTTGATCATCAATTTATGGGAGGTTCAACAGTAAGGATAATGGACACTGTGTATGAGTATGACAATTGGCTTGGCTTTGCCTTTTGTGTGACATTTGAGGAAAACTATCATCCAACAATGTCTAGTTCTTCACATTATTCATTTCCCTCAATGTTGCCACGTCCTATCTATCTTTCTTTTGAAAGTGAACACATAGAAGAAACCTTCGATTGGCCACTTCAGCTAGATTACAAGGTTGATGGCTCAAATTCAGAACATCTTTGGCTAATCTATATCTCTCGGCCACATTGCCATTTTGTGACTACAGGAGCACATATCACGTTTAAAACTTGTCCAGACAATCTTCCCTTGGATTTTGTACATGAAAGTAGCAGCAGCAGCTCGGGGTCTAGATTACAGCTTCCCTACAATTGTGCGGTTGACCGGTGTGTGGTGGTTGGGTAG 2109 0.4068 MDSKSKFSDMLLFWRSFLPRPFWALLGRRSSSDLSQGDATSSSSMHSNSILNYKYDVFISFRGPDTRNTFVDHLYNHLIRKGIFAFKDDKRLQKGESISPQLIQAIKSSRVSIVVFSKTYAQSTWCLDEMATIAECHQELKQTVFPVFYDVDPSHVRNQNGVYENAFVLHTLKYEGKVDRWKRALTGLAGLVGWDVRNNLRYLQWHGYPFASLPFQFEPYRLVELNMPYSNIQQLWEGRKDLPYLKSVDLSNSKYLMETPNFSGSRRVERLDLTGCINLSWVHPSIGLLEKLAFLSLEGCSSLVSLDLGTTENLYSLKVLHLSGCTKLGITPDFTKVSNLEYLDIDQCMSLSTVDQSIGDLTKLKFLSLRDCTNLVSIPESVNSMTSLVTLDLCGCLKIENLPLLGKKFRSSYYLGSLIFLDLSFCNLSKVPEAIGLLRCLERLNLEGNNFFSLPSSMGRLSRLAYLNLAHCKRLQYLPDLQLCATASSGGRYFKTVSGSHHHRSGLYVFNCSFLEIPEEGPNLALLWLERLIKNPCHFRCGFDIVVPGNIIPQWFDHQFMGGSTVRIMDTVYEYDNWLGFAFCVTFEENYHPTMSSSSHYSFPSMLPRPIYLSFESEHIEETFDWPLQLDYKVDGSNSEHLWLIYISRPHCHFVTTGAHITFKTCPDNLPLDFVHESSSSSSGSRLQLPYNCAVDRCVVVG* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02163 702 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 197 328 IPR044974 GO:0006952
Rops11g02163 702 Gene3D - 52 200 IPR035897 -
Rops11g02163 702 Gene3D Ribonuclease Inhibitor 201 309 IPR032675 -
Rops11g02163 702 Pfam TIR domain 54 194 IPR000157 GO:0007165
Rops11g02163 702 SUPERFAMILY L domain-like 194 539 - -
Rops11g02163 702 Gene3D Ribonuclease Inhibitor 310 412 IPR032675 -
Rops11g02163 702 Gene3D Ribonuclease Inhibitor 413 536 IPR032675 -
Rops11g02163 702 Pfam C-JID domain 547 626 IPR045344 -
Rops11g02163 702 ProSiteProfiles TIR domain profile. 53 212 IPR000157 GO:0007165
Rops11g02163 702 SUPERFAMILY Toll/Interleukin receptor TIR domain 44 194 IPR035897 -
Rops11g02163 702 Pfam Leucine Rich Repeat 222 238 IPR011713 -
Rops11g02163 702 SMART LRR_typ_2 438 461 IPR003591 -
Rops11g02163 702 SMART LRR_typ_2 415 437 IPR003591 -
Rops11g02163 702 SMART till_3 54 191 IPR000157 GO:0007165
Rops11g02163 702 FunFam Disease resistance protein (TIR-NBS-LRR class) 51 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02163 Rops-Chr11 35899721 35905158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02163 310 480 WRKY Transcription Factor Family AT4G12020 35.465 8.73e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02163 - - psat:127091204 673.315