LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g02157	ATGTTCTCCTCATTCCATCTGAAACTGTTCTCAATCCTCCTGTTCTACGTACATGGCTTCCTTATCTTTTCACATAGTGAAACAGCATCAACTTTCAGCCTTTATAACTGCACAAGCATGCATACATTTAACTCCAATAGCACTTACCAACTCAATCTAAACACACTCTTATCTGCACTTTCATCCAAAGCCTCTGACAGCACCAACAATGGCTTCCACAACATCACAATTGGTGGAACAAACACTTGGGACACTATTCATGGTCTCTTCATGTGTACTGGATACACAGAACAATGTGGAGAATGTGTGAGAAACTCCATCAAAACACTTTCCTCAATGTGTGTATTCAATAAAGAAGCTATAATTTGGTCTGATGAATGTTTGGTCCGTTATTCCAACAAGTCTTTCTTAAACACTATGGAGGAATGGCCATCATGCTGTGTGCAGAACAAGGAGGATTATCAAGGGTCATTGGATAGTTTCAATAAAGTGCTAAGTTCTTTGATGGAGGATCTTGTAACTCAGGCCAGTGAAACTCCAATGGGTTCTAATAAATTTGCTTTCAAGAAAGCAATTTTCTCTGAGGATAAATCATCCTTGTTTGGTCTTGCTCAGTGCACACCAAACCTTTCCAAGGATAATTGCAAGCAGTGCCTTAGGGATGCCATGACTTATCTTCAGACCTCATGTGCTAGAGGCAAGATAGGAGGAAGTGTTCTATACCCAAGTTGTTTTGTTAGATATGATCCTCATACATTTTTCTCACTACCTAGAGCTGGTGAAGAGATTGCAACAGAAATGAACCCTTTGCAATTTGATTTGGATACTATTCAACAAGCGACCAACAAGTTCTCTGATGATAACAAGATAGGGGAAGGTGGTTTTGGTGCAGTTTACAAGGGTATGTTATCTGATGGACATGAAATAGCTGTAAAGAGGCTCACAAGAAATTCAAGTCAAGGAGCTACAGAATTTAAGAATGAGGTTTTGCTCATAGCCAAGCTTCAACACAGGAATCTTGTGAGACTATTAGGATTTTGCATCGAAAGCAATGAGAAGATACTCATTTATGAATTTATGCACAACAAAAGCCTTGATTACTACCTATTCAGCCCTGAAAAACATAGAAAATTAACTTGGCCTGAACGTTACGAAATCATTAGAGGGATTGTCCGAGGTATTCTTTATCTCCACGAAGATTCTCATCTCAAGATCATACACTGTGATCTTAAACCCAGCAACATTTTGTTAGACAATGGAATGAATGCAAAGATATCAGATTTTGGCTTGGCAAGGATCGTTGCCATTGATCATATACAAGGAAATACTAGTGTAATTGCTGGGACATATGGCTACATGTCTCCTGAATATGCAATGCTTGGGCAATTTTCTGTGAAATCTGATGTATTCAGCTTTGGAGTCATAGTTCTTGAGATTGTTAGTGGAAAAAGAAATGTTGATTTTAATGGGGTAGATTCCATTGATGACCTCTTGAGCCATGCTTGGAATAGGTGGAGGAATAATAAGCTAATGGAATTGTTGGATCCCACATTAGCACCCTCGTTTTCAGAAACAGAAATCAATAGGTGCATACAAATTGGTCTACTATGTGTGCAAGAAAACCCAGATCAAAGGCCTACTATGGCAACAATTGGTTTGTATTTTAACTGTGATTCAATGGCTCTGCCACTACCTCAAGAGCCAGCATTTTTCATGCGTGGGAAAACAGAATCAAGGATGGTTAAGAAGGAATCAGAGTCAGGTCGACCTAGAAGTTATTCAGTAGAATTGTCTGTTAATTAA	1803	0.3888	MFSSFHLKLFSILLFYVHGFLIFSHSETASTFSLYNCTSMHTFNSNSTYQLNLNTLLSALSSKASDSTNNGFHNITIGGTNTWDTIHGLFMCTGYTEQCGECVRNSIKTLSSMCVFNKEAIIWSDECLVRYSNKSFLNTMEEWPSCCVQNKEDYQGSLDSFNKVLSSLMEDLVTQASETPMGSNKFAFKKAIFSEDKSSLFGLAQCTPNLSKDNCKQCLRDAMTYLQTSCARGKIGGSVLYPSCFVRYDPHTFFSLPRAGEEIATEMNPLQFDLDTIQQATNKFSDDNKIGEGGFGAVYKGMLSDGHEIAVKRLTRNSSQGATEFKNEVLLIAKLQHRNLVRLLGFCIESNEKILIYEFMHNKSLDYYLFSPEKHRKLTWPERYEIIRGIVRGILYLHEDSHLKIIHCDLKPSNILLDNGMNAKISDFGLARIVAIDHIQGNTSVIAGTYGYMSPEYAMLGQFSVKSDVFSFGVIVLEIVSGKRNVDFNGVDSIDDLLSHAWNRWRNNKLMELLDPTLAPSFSETEINRCIQIGLLCVQENPDQRPTMATIGLYFNCDSMALPLPQEPAFFMRGKTESRMVKKESESGRPRSYSVELSVN*	601

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g02157	600	CDD	STKc_IRAK	290	551	-	-
	Rops11g02157	600	ProSiteProfiles	Gnk2-homologous domain profile.	31	136	IPR002902	-
	Rops11g02157	600	Pfam	Salt stress response/antifungal	147	249	IPR002902	-
	Rops11g02157	600	Pfam	Salt stress response/antifungal	37	133	IPR002902	-
	Rops11g02157	600	FunFam	cysteine-rich receptor-like protein kinase 10	360	562	-	-
	Rops11g02157	600	SUPERFAMILY	Protein kinase-like (PK-like)	268	576	IPR011009	-
	Rops11g02157	600	ProSitePatterns	Protein kinases ATP-binding region signature.	290	312	IPR017441	GO:0005524
	Rops11g02157	600	Gene3D	Phosphorylase Kinase; domain 1	257	359	-	-
	Rops11g02157	600	ProSiteProfiles	Protein kinase domain profile.	284	555	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops11g02157	600	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	405	417	IPR008271	GO:0004672\|GO:0006468
	Rops11g02157	600	SMART	serkin_6	284	555	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops11g02157	600	ProSiteProfiles	Gnk2-homologous domain profile.	142	253	IPR002902	-
	Rops11g02157	600	MobiDBLite	consensus disorder prediction	581	600	-	-
	Rops11g02157	600	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	30	591	-	-
	Rops11g02157	600	Gene3D	Transferase(Phosphotransferase) domain 1	360	557	-	-
	Rops11g02157	600	Pfam	Protein kinase domain	285	550	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops11g02157	600	FunFam	Cysteine-rich receptor-like protein kinase 10	254	359	-	-
	Rops11g02157	600	Gene3D	-	29	136	IPR038408	-
	Rops11g02157	600	Gene3D	-	142	253	IPR038408	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g02157	Rops-Chr11	35792449	35794965	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g02157	33	600	Receptor kinase-like Gene Family	AT4G11480	39.650	5.56e-148	440

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Rops11g02157		Pkinase	3.3e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g02157	-		-	mtr:11443024	822.772