Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02155 ATGGAGTTGAAAAAGGGAAAGCTTGTCAGGTTCTATTCGGATGGCAAAAAGCATAAAGAACCACTGTGGGCAACAACTGAACCACCAGCGCTTGAAAAGTCATCATCCAAATACAAGTTCAGAACAGCATATGTGGCACCAAGCTCGCGGGTATTTGGCCGGGGTGAACTTGTCATGGACCCAAAGAAAATTGCAAGGAGGTATATCAGATCTGATTTCTTCATTGATTTTATTGCCACACTACCTCTACCACAGATGGTCATCTGGTTTATTATACCGGCAACAAGAAGCCCTCAAACTGATCACAAGAATAATGCTCTTGCATTGATTGTTTTGCTACAATATGTTCCAAGATTATATTTGATTTTTCCTTTAAGTTCTCAAATAATCAAAGCAACAGGGGTGGTTACGAAGACTGCCTGGGCAGGAGCTGCATATAATTTGCTATTGTATATGTTGGCTAGCCATGTTTTAGGGGCATCTTGGTATCTTCTGTCTGTTGACCGATATACTACTTGCTGGAAATCCTCTTGCAAAAAGGAACATATCCCTGAAAATTGCTTTCTTTACCTGGACTGCAGTTCTTTGAATAGTCAGATGCTAAAAAAACACGTTGTTTCTTCAGACTTTATCCCAAAATACTTTTATTGTTTATGGTGGGGGTTGCAGCAATTGAGTTCTTACGGACAGAACCTAGACACAAGCACTTTTATTGGAGAAACATCATTTGCTATTGTCATTGCCATCTTGGGTCTTGTGTTATTTTCCCATTTGATAGGGAACATGCAGACATATTTGCAATCAATTACTATAAGGCTTGAGGAGTGGAGGCTTAAGCGGAGAGACACAGAGGAGTGGATGAGGCATCGCCAACTCCCTGAAGATTTGAAATATCGTGTTAGACGATTTGTTCAATATAAATGGCTTGCAACTCGTGGTGTTGATGAAGAAACCATTCTACGTGCATTACCTGCTGATCTTCGCCGTGATATCCAACGCCACCTATGCTTGGACCTTGTTAGACGAGTTCCCTTCTTCTCACAGATGGATGATCAGCTTCTTGATGCAATATGTGAGCGGCTGGTATCATCTCTGAGCACTCTAGGCACCTACATTGTTCGCGAGGGCGATCCTGTAACGGAAATGCTTTTTATTATTAGAGGTAGACTTGATAGTTCTACAACAAATGGCGGCCGAACTGGTTTCTTCAACTCAATCATATTGAGACCTGGAGATTTTTGTGGAGAGGAACTACTTTCTTGGGCTTTACTCCCAAAATCAACCATGAATTTGCCTTCTTCAACTAGGACAGTTAAAGCCCTAAGTGAGGTTGAGGCTTTCGCTCTTAGGGCTGAAGACCTCAAGTTTGTTGCTAATCAATTTAGGCGCCTCCACAGCAAGAAGCTGCAGCACACCTTTCGATATTACTCGCACCATTGGAGGACTTGGGCAGCCTGCTTTATACAGGCTGCATGGCGTCGATATAAGAAAAGGATGTGTGCCAAAGACCTCAGTTTGAGGGAATCCCTTCCTTTAGATGAAACAGAAGTGGCCAGTGAGAGAGAACATGAGGAGGAATACCCTGCAGGTTCAAATTCATCTCAGGCTAAATTGAACCTTGGTGTCACAATTCTTGCTTCAAGGTTTGCTGCTAACACACGAAGAGGAGCTCTGAAGATGAAAGATGACCTGCCTCAGTTACGAAAACCTGAAGAACCTGACTTTTCCACTGAAGCTGATGATGATTAG 1749 0.4265 MELKKGKLVRFYSDGKKHKEPLWATTEPPALEKSSSKYKFRTAYVAPSSRVFGRGELVMDPKKIARRYIRSDFFIDFIATLPLPQMVIWFIIPATRSPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSVDRYTTCWKSSCKKEHIPENCFLYLDCSSLNSQMLKKHVVSSDFIPKYFYCLWWGLQQLSSYGQNLDTSTFIGETSFAIVIAILGLVLFSHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMRHRQLPEDLKYRVRRFVQYKWLATRGVDEETILRALPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTLGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTMNLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRYYSHHWRTWAACFIQAAWRRYKKRMCAKDLSLRESLPLDETEVASEREHEEEYPAGSNSSQAKLNLGVTILASRFAANTRRGALKMKDDLPQLRKPEEPDFSTEADDD* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02155 582 FunFam Cyclic nucleotide-gated ion channel 1 272 336 - -
Rops11g02155 582 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 38 575 - -
Rops11g02155 582 Pfam Ion transport protein 50 271 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops11g02155 582 ProSiteProfiles cAMP/cGMP binding motif profile. 345 475 IPR000595 -
Rops11g02155 582 Gene3D - 42 270 - -
Rops11g02155 582 MobiDBLite consensus disorder prediction 560 582 - -
Rops11g02155 582 SUPERFAMILY Voltage-gated potassium channels 63 267 - -
Rops11g02155 582 Gene3D Jelly Rolls 343 463 IPR014710 -
Rops11g02155 582 MobiDBLite consensus disorder prediction 513 528 - -
Rops11g02155 582 FunFam Cyclic nucleotide-gated ion channel 1 343 461 - -
Rops11g02155 582 Pfam Cyclic nucleotide-binding domain 369 456 IPR000595 -
Rops11g02155 582 CDD CAP_ED 345 476 IPR000595 -
Rops11g02155 582 PRINTS EAG/ELK/ERG potassium channel family signature 258 267 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops11g02155 582 PRINTS EAG/ELK/ERG potassium channel family signature 153 163 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops11g02155 582 PRINTS EAG/ELK/ERG potassium channel family signature 214 231 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops11g02155 582 PRINTS EAG/ELK/ERG potassium channel family signature 240 251 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops11g02155 582 PRINTS EAG/ELK/ERG potassium channel family signature 36 45 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops11g02155 582 PRINTS EAG/ELK/ERG potassium channel family signature 308 315 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops11g02155 582 Gene3D Helix hairpin bin 273 336 - -
Rops11g02155 582 MobiDBLite consensus disorder prediction 560 575 - -
Rops11g02155 582 SUPERFAMILY cAMP-binding domain-like 275 467 IPR018490 -
Rops11g02155 582 SMART cnmp_10 345 476 IPR000595 -
Rops11g02155 582 MobiDBLite consensus disorder prediction 513 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02155 Rops-Chr11 35706105 35719361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02155 39 581 Ion Channels AT4G30360 73.529 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02155 K05391 - gmx:100808425 1011.52