Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02153 ATGTTGATAACGGTCAGGGAAGCTTCCTCTTCTCCCCTCTGTTCCTGGCTTAATCGTCTCATCGCAAAACCCCCTAAAACACTCAAAACTCCCATTTGCCAAGCCAGTTTCTCTGTCCAGAGAAGACCCAAAATCTCCACTGATTCATGGAACTCTTGCCATCTCTCTACCAGCAGTGAGGCAGCGAATTTTGATCCCTTGGGTATTAACACAGATTTATCTTCTACTCTAAGCTCAACCTGGAAAAATCTAGTGACTGTATTTTCACAAACATTCGAGAGTGCTTCAAGTACAGAAAAGGAAAAACCTAACTCATCTCGAGGAGTAGCAGCTGCAATAGAGGACAGTTCAATTGATTTTGGTGACTTCTTTAAAGGTCCACTGCCAGAGAAGTTTCTTAAGCTTTTAGGGTTTCTTGCATTGTCACGGCTTGGTGTGTACATACCTCTGGGTGGAGTTAATAGGGAGGCTTTTGTTGGAAATTTGGATCAGAATAGTTTATTAAGCACTCTGGACTCATTTTCTGGTGGGGGTATTGGTAGACTTGGGATATGTTCACTTGGTATTGTTCCCTTCATCAATGCACAGATTGTTTTCCAGCTTCTTGCTCAAATATATCCCAAGTTACAAGATCTTCAGAAAAGAGAAGGTGAGGCTGGAAGAAAGAAAGTTCTTCAGTACACTCGATATGCCTCAGTTGGATTTGCCATTGTACAGGCAATTGGTCAAGTTCTTTACCTACGTCCCTATGTCAATGACTTTAGTACGGAGTGGGCTATTTCTTCTGTTATCTTATTGACACTAGGCTCTGTGTTTACAACCTACATTGGTGAACGAATCACTGACCTAAAACTTGGGAATGGCACATCTCTCTTGATATTCACAAACATTATCTCGTACTTGCCAGCTTCTTTTGGTCGGACATTTGCACAAGCATTTAATGATGCTAACTACGTTGGACTTGTTACCATCATACTGTCCTTCTTTCTGTTGGTAGTTGGTATTGTCTATGTTCAGGAAGCTGAGAGAAAAATTCCTCTTAACTATGCTTCTAGATTCACCAGCAGAAGCGGCGGACTTGAAAAATCTGCTTACTTACCCTTTAAGGTAAATAGTTCTGGAGTAATGCCAATCATATTTTCTACATCATCATTAGCTCTTCCTGGCACCTTAGCACGCTTCACTGGTTTAAGTGCGTTGAAGAAGGCTGCAGTGGCTTTAAACCCAGGGGGCTCCTTCTATCTTCCATTTAACATACTTTTAATAGCCTTCTTCAACTACTATTATACTTTCCTCCAATTGGACCCTGATGATATGAGTGAACAATTGAAACGTCAAGGTGCTTCAATTCCACTCGTCCGACCAGGCAGAAGTACAGCTACATTTATCAAAACTGTTCTTAGTCGAATATCAGTTCTGGGTTCAACATTTTTGGCTATCTTGGCTGCTGGTCCAGCAGTTATAGAGCAGACCTCACACTTGACTGCATTCCGGGGATTTGCTGGAACATCCATTCTTATCCTTGTTGGTTGTGCAACAGACACAGCAAGAAAAGTTCAAGCTGAGATTATATCCCAAAAATATAAGAACATAGAGTTCTATGACTTTGACAAGTATTGA 1620 0.413 MLITVREASSSPLCSWLNRLIAKPPKTLKTPICQASFSVQRRPKISTDSWNSCHLSTSSEAANFDPLGINTDLSSTLSSTWKNLVTVFSQTFESASSTEKEKPNSSRGVAAAIEDSSIDFGDFFKGPLPEKFLKLLGFLALSRLGVYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWAISSVILLTLGSVFTTYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTFAQAFNDANYVGLVTIILSFFLLVVGIVYVQEAERKIPLNYASRFTSRSGGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLSALKKAAVALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDMSEQLKRQGASIPLVRPGRSTATFIKTVLSRISVLGSTFLAILAAGPAVIEQTSHLTAFRGFAGTSILILVGCATDTARKVQAEIISQKYKNIEFYDFDKY* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02153 539 PRINTS Preprotein translocase SecY subunit signature 282 305 - -
Rops11g02153 539 PRINTS Preprotein translocase SecY subunit signature 256 281 - -
Rops11g02153 539 PRINTS Preprotein translocase SecY subunit signature 467 485 - -
Rops11g02153 539 PRINTS Preprotein translocase SecY subunit signature 373 392 - -
Rops11g02153 539 PRINTS Preprotein translocase SecY subunit signature 412 434 - -
Rops11g02153 539 PRINTS Preprotein translocase SecY subunit signature 132 150 - -
Rops11g02153 539 PRINTS Preprotein translocase SecY subunit signature 224 247 - -
Rops11g02153 539 PRINTS Preprotein translocase SecY subunit signature 182 202 - -
Rops11g02153 539 PRINTS Preprotein translocase SecY subunit signature 501 519 - -
Rops11g02153 539 Pfam SecY 184 515 IPR002208 GO:0015031|GO:0016020
Rops11g02153 539 Hamap Protein translocase subunit SecY [secY]. 120 532 IPR026593 -
Rops11g02153 539 ProSitePatterns Protein secY signature 2. 275 292 IPR030659 -
Rops11g02153 539 NCBIfam preprotein translocase subunit SecY 130 528 IPR002208 GO:0015031|GO:0016020
Rops11g02153 539 Gene3D SecY subunit domain 122 528 IPR023201 -
Rops11g02153 539 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 124 531 IPR002208 GO:0015031|GO:0016020
Rops11g02153 539 FunFam Preprotein translocase subunit SECY, chloroplastic 123 528 - -
Rops11g02153 539 SUPERFAMILY Preprotein translocase SecY subunit 124 522 IPR023201 -
Rops11g02153 539 ProSitePatterns Protein secY signature 1. 183 202 IPR030659 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02153 41 539 Chloroplast and Mitochondria Gene Families AT2G18710 82.834 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02153 K10956 - gmx:100810430 952.97