Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02145 ATGGTTGCCAATCGGGTTTTTCTCCTCCTCCTCCTCCTCTTGTTTCTCTCGCCTGTTGTTCTTTGTTCCTCTTCCGAGCCTCGTAACCCCGAAGTGGAGGCTTTGATGAGCATAAGGGAAGAACTGAATGATCCACATGGTGTTCTTAGCAACTGGGATGAATTTTCTGTGGACCCTTGTAGCTGGGCTATGATTACTTGTTCCTCTGATTATCTTGTTATAGGCCTGGGAGCACCTAGTCAATCTCTATCTGGAACTTTGTCTCCAGCTATTGGAAATCTAACGAATCTTCGACAAGTGTTACTACAGAACAATAACATCTCTGGCAAAATCCCACCAGAGCTTGGTGTACTTCCCAAGCTTCAAACTTTGGATCTTTCTAATAATAAATTCTCTGGGGTGATTCCAGGATCTCTTAGTCAGTTGAATAGTCTCCAGTATCTGAGGCTGAACAACAATAGCTTATCTGGGCCCTTTCCTGTTTCACTAGCCAAAATCCCACAACTTGCTTTCTTGGACTTGTCTTATAACAATCTCAGTGGACCATTGCCCAAGTTTCCAGCTAGATCATTCAATGTTGTGGGAAACCCATTAGTTTGTGGGAGTAGCTCTACTGAAGGTTGCTCTGGTTCGGCAACCTTCATGCCTGTTTCCATTTCTCTAGCATCATCACAAGGGAAAAACAAGTCCAAGAAACTAGCACTCGTGCTTGGGATTAGCCTCAGTTGTGTTTTTCTCATACTTCTGCTTTTTGGGCTTTTTTGGTATAGAAAGAAATGGCAGCACCAAGCGATCCTGTACATTGGCGATTATCAAATGGAAGAGGGACTTGTTAGCTTGGGAAATCTGAAAAATTTCACTTTTAGAGAGCTCCAAAATGCAACAGATAATTTCAGCTCCAAGAACATACTTGGTGCTGGAGGCTTTGGCAATGTTTATAGGGGGAAACTTGGAGATGGCACAATGGTGGCAGTGAAAAGGCTGAAGGATGTGACTGGAAGTGCTGGTGAATCACAGTTCCGAACAGAAGTGGAGATGATTAGCTTGGCAGTTCACCGGAATTTACTTCGCTTAATTGGATATTGTGCCACTCCCAATGAAAAGCTTCTGATTTATCCTTTTATGTCTAATGGCAGTGTGGCCACCAGGCTTAAAGGCAAACCTGCTTTAGATTGGAACACAAGAAAGAGAATAGCAATTGGAGCTGCTAGAGGACTTCTCTATCTACATGAACAATGTGATCCTAAGATAATACACAGAGATGTGAAAGCTGCTAATGTGCTTCTGGATGACTTCTGTGAAGCTGTTGTTGGTGATTTTGGCCTTGCAAAGCTCCTTGACCATGCTGACTCCCATGTCACCACTGCTGTCCGTGGCACTGTGGGGCACATTGCACCAGAATACCTCTCCACTGGTCAATCATCTGAGAAAACGGATGTATTTGGATTTGGTATTCTCTTGTTGGAGCTCATAACTGGAATGACAGCTCTTGAGTTTGGAAAAACGCTGAATCAAAAAGGAGCAATGCTAGAGTGGGTCAGAAAAATACAGCATGAAAAGAAAGTTGAAGTGTTGGTGGATAAAGAATTAGGCAGCAACTATGACCGGATAGAAGTTGGGGAGATGCTACAAGTAGCTTTACTTTGCACTCAATATTTACCAGCCCACCGACCAAAAATGTCTGAAGTGGTTCGAATGCTCGAAGGTGATGGTCTTGCTGAGAAGTGGGCAGCATCACATGATCATGGTGGTCTCAGTTTGAACGCTTGCAACTGTAGCAAAAGTTCATCCCGCCCTACCACTACTTCAAAGCATGATGACATCAATGCTCATGATCATTCCAGCATGTTTGGCATGACAATGAATGATGATGATGGTGATGAACATTCTTTGGATTCCTATGCCATGGAACTCTCCGGTCCTAGATAA 1929 0.436 MVANRVFLLLLLLLFLSPVVLCSSSEPRNPEVEALMSIREELNDPHGVLSNWDEFSVDPCSWAMITCSSDYLVIGLGAPSQSLSGTLSPAIGNLTNLRQVLLQNNNISGKIPPELGVLPKLQTLDLSNNKFSGVIPGSLSQLNSLQYLRLNNNSLSGPFPVSLAKIPQLAFLDLSYNNLSGPLPKFPARSFNVVGNPLVCGSSSTEGCSGSATFMPVSISLASSQGKNKSKKLALVLGISLSCVFLILLLFGLFWYRKKWQHQAILYIGDYQMEEGLVSLGNLKNFTFRELQNATDNFSSKNILGAGGFGNVYRGKLGDGTMVAVKRLKDVTGSAGESQFRTEVEMISLAVHRNLLRLIGYCATPNEKLLIYPFMSNGSVATRLKGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTLNQKGAMLEWVRKIQHEKKVEVLVDKELGSNYDRIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLAEKWAASHDHGGLSLNACNCSKSSSRPTTTSKHDDINAHDHSSMFGMTMNDDDGDEHSLDSYAMELSGPR* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02145 642 Gene3D Transferase(Phosphotransferase) domain 1 375 584 - -
Rops11g02145 642 SMART LRR_typ_2 142 173 IPR003591 -
Rops11g02145 642 SMART LRR_typ_2 118 141 IPR003591 -
Rops11g02145 642 SMART LRR_typ_2 94 116 IPR003591 -
Rops11g02145 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Rops11g02145 642 MobiDBLite consensus disorder prediction 592 642 - -
Rops11g02145 642 Pfam Protein tyrosine and serine/threonine kinase 301 567 IPR001245 GO:0004672|GO:0006468
Rops11g02145 642 FunFam Putative LRR receptor-like serine/threonine-protein kinase 28 210 - -
Rops11g02145 642 ProSiteProfiles Protein kinase domain profile. 298 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g02145 642 FunFam Somatic embryogenesis receptor kinase 1 268 374 - -
Rops11g02145 642 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Rops11g02145 642 PRINTS Leucine-rich repeat signature 166 179 - -
Rops11g02145 642 PRINTS Leucine-rich repeat signature 121 134 - -
Rops11g02145 642 Gene3D Ribonuclease Inhibitor 28 210 IPR032675 -
Rops11g02145 642 SMART serkin_6 298 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g02145 642 SUPERFAMILY L domain-like 29 193 - -
Rops11g02145 642 Pfam Leucine rich repeat 119 179 IPR001611 GO:0005515
Rops11g02145 642 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 578 - -
Rops11g02145 642 Gene3D Phosphorylase Kinase; domain 1 270 374 - -
Rops11g02145 642 SUPERFAMILY Protein kinase-like (PK-like) 278 568 IPR011009 -
Rops11g02145 642 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Rops11g02145 642 FunFam Somatic embryogenesis receptor-like kinase 1 375 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02145 Rops-Chr11 35565120 35570329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02145 1 642 Receptor kinase-like Gene Family AT5G16000 62.709 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Rops11g02145 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02145 - - lja:Lj6g3v1048910.1 1088.17