Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02144 ATGCCAGATTTGGGGAACCTCTCTCTCTCCACGACACTCATGCTCTCTCACTGCTCCACTGTCAAACCCTCTGATATCGCCGATTCCGAAGTCAAAGCCCTACTACCCAATGGATACGGTTCCGACGACGGTGGCGAGGCTCGGGTTTTGAAACGGAGCCGCTGTTCCCTCGATCGGGTCAGGAAGATAGGCAATGACAAAGGCTTTGAGGATCGCCTCAAAGATCCTTTCTCTCTTCCTTTTCTTGTTGGCGCTCCAAAGATGGTTGATTGTTCATTTTGCCACCATTTTGTCTACCCTGGAGAGGGAATATTATGTTCTGTTCGTGGATGTGACGGGCGCTACCATATGGAATGCGCAAAAGAAGCTGTTGGGGTTTCGAATCTGAAAAAATTCAAGTGCCCACAACATGTATGCTTCATTTGCAAACAAAAGTTGCACTTCCGGTGCGTGCGTTGCACAGTGGCATTTCATAATAAATGTGCTCCATGGCCAGAAGCGGTGATGCATCTAAACGATGGGCAAGTTGTTTGTTGGAGGCATCCTTCTGATTGGCGCCTGGATAGAAAGTTTGATACTTCAACACGTGACATCTCGGAAGTGTTTTGTCGCTTGCCTCTTCCTTTTGTCAATGAGGAGTTCAAGATTGACTTCACTTGGAAAGACATGGACAGTAAGATGGAGCCACCACCATATGTTCACATAAGACGCAATATATACCTGGTGAAGAAGAAGCGTAGTGTTGTAGATGATGGCGCAGGGTGCACCAGTTGCAGTTCTACATGCTCTGAGGACTGTGTATGCAGGGTTCAATGTATAAGTTGTTCAAAGGCTTGTCGCTGCTCAGAAAACTGCAATAATCGGCCGTTTCGTAAGGAGAAAAAGATCAGGATTGTCAAGACTGAACTTTGTGGATGGGGAGTAGAGGCCGCTGAAGCAATCAATAAAGGCGGGTTTATAATTGAGTATATTGGAGAAGTCATTGATGATGCTTTATGTGAGAAAAGGCTTTGGGACATGAAATACAGGGGTGTACAGAACTTTTACATGTGTGAGATTCGGAAAGACTTCACAATAGACGCAACTTTCAAAGGAAATACGTCACGCTTTTTGAACCATAGCTGCGATCCCAACTGTTTTTTGGAAAAGTGGCAAGTTGATGGTGAAACCCGTGTGGGTGTATTTGCTGCTCGTGCAATCGAAGTTGGAGAGCCGTTAACATATGATTACAGATTTGTGCAATTTGGTCCAGAGGTGAAATGCCACTGTGGTGCCTCAAACTGTCAAGGCTTTCTAGGTACTAAAAAGAAAATTGGCAAGGTAGACCTCTGTTGGGGATCTAAACGTAAGCGAACGTCAAATTCTTGTATTACGGTAGTAACTGCTGTATGA 1392 0.4526 MPDLGNLSLSTTLMLSHCSTVKPSDIADSEVKALLPNGYGSDDGGEARVLKRSRCSLDRVRKIGNDKGFEDRLKDPFSLPFLVGAPKMVDCSFCHHFVYPGEGILCSVRGCDGRYHMECAKEAVGVSNLKKFKCPQHVCFICKQKLHFRCVRCTVAFHNKCAPWPEAVMHLNDGQVVCWRHPSDWRLDRKFDTSTRDISEVFCRLPLPFVNEEFKIDFTWKDMDSKMEPPPYVHIRRNIYLVKKKRSVVDDGAGCTSCSSTCSEDCVCRVQCISCSKACRCSENCNNRPFRKEKKIRIVKTELCGWGVEAAEAINKGGFIIEYIGEVIDDALCEKRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCFLEKWQVDGETRVGVFAARAIEVGEPLTYDYRFVQFGPEVKCHCGASNCQGFLGTKKKIGKVDLCWGSKRKRTSNSCITVVTAV* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02144 463 SMART set_7 294 417 IPR001214 GO:0005515
Rops11g02144 463 ProSiteProfiles AWS domain profile. 251 294 IPR006560 GO:0005634|GO:0042054
Rops11g02144 463 PANTHER SET DOMAIN PROTEINS 67 453 - -
Rops11g02144 463 CDD SET_ASHR3-like 295 433 - -
Rops11g02144 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 184 IPR013083 -
Rops11g02144 463 FunFam Histone-lysine N-methyltransferase 209 443 - -
Rops11g02144 463 ProSiteProfiles SET domain profile. 294 411 IPR001214 GO:0005515
Rops11g02144 463 SMART PHD_3 90 138 IPR001965 -
Rops11g02144 463 Gene3D SET domain 210 451 IPR046341 -
Rops11g02144 463 SMART PostSET_3 417 433 IPR003616 -
Rops11g02144 463 SUPERFAMILY SET domain 220 430 IPR046341 -
Rops11g02144 463 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 462 IPR025787 -
Rops11g02144 463 Pfam SET domain 305 410 IPR001214 GO:0005515
Rops11g02144 463 ProSiteProfiles Post-SET domain profile. 417 433 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02144 Rops-Chr11 35519042 35526257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02144 275 432 C2H2 Transcription Factor Family AT2G23740 36.872 1.17e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops11g02144 SET 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02144 - - gmx:100791481 765.763