Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02142 ATGGCGAAACTATCACAACAGCAAACCCAGAAAAATAATGCAAGAAGAAACAATAACAATAACCTTAACACTGTCACCACCAAGGTGAAACGAACAAGGAGAAGTGTCCCTAGAGATTCCCCTATTCAACGCAGCTCAATATACAGAGGAGTCACTAGGCACCGATGGACAGGTCGATATGAAGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCACAAAACAAGAAAGGAAGACAAGTTTACCTTGGTGCTTATGACGATGAAGAGGCAGCAGCACATGCTTATGATTTAGCAGCACTGAAATATTGGGGTCCAGATACCATTCTTAATTTTCCGTTATCGACCTATCAGAATGAACTGAAACAAATGGAGGGTCAATCAAGGGAGGAGTATATTGGATCATTAAGGAGGAAAAGCAGCGGTTTTTCTCGTGGAGTTTCTAAATACAGGGGTGTTGCAAGACACCATCATAACGGAAGATGGGAAGCTCGAATTGGCAGGGTTTTCGGCAACAAATATCTTTACCTCGGAACTTATGCTACCCAAGAAGAAGCTGCCACAGCATATGATATGGCAGCTATTGAATATCGTGGACTCAATGCCGTTACCAATTTTGACCTCAGCCGTTACATTAAATGGCTTAAGCCAAATCACAACAACGACGATAACAACACAATTAGTTCTACCCTTGATGATTCTAACCCAATTTGTAACACCAACTTCATCCCAAACCCAAATCAAGAAGAAGGATTTAACTTCTTCCACAATCAAGAACCATTTAATAATGGTGAAGAAGCAACAATGACCCAACCTCGACCAGCTACTGCCACGTCAGCCCTAGGACTTTTGCTTCAATCATCCAAGTTTAAGGAGATGATGGAGATGACATCTGCCATTGATTTGTCGACCCCACAAGAATCTGAGTTGACACCATGTTCATTTCCTGATGATATTCAGACATATTTTGAGTGTGAAGATTCCAGTAAATATGGAGAAGGGGATGATATCATGTTCAGTGAGCTCAACTCTTTTGCGCCACCTATATTCCATTGTGATGACTTTGAGGGCTTAAAGGTCTAA 1083 0.4137 MAKLSQQQTQKNNARRNNNNNLNTVTTKVKRTRRSVPRDSPIQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGPDTILNFPLSTYQNELKQMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNHNNDDNNTISSTLDDSNPICNTNFIPNPNQEEGFNFFHNQEPFNNGEEATMTQPRPATATSALGLLLQSSKFKEMMEMTSAIDLSTPQESELTPCSFPDDIQTYFECEDSSKYGEGDDIMFSELNSFAPPIFHCDDFEGLKV* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02142 360 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700|GO:0006355
Rops11g02142 360 PRINTS Ethylene responsive element binding protein signature 189 209 IPR001471 GO:0003700|GO:0006355
Rops11g02142 360 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Rops11g02142 360 SMART rav1_2 47 119 IPR001471 GO:0003700|GO:0006355
Rops11g02142 360 SMART rav1_2 149 213 IPR001471 GO:0003700|GO:0006355
Rops11g02142 360 ProSiteProfiles AP2/ERF domain profile. 47 113 IPR001471 GO:0003700|GO:0006355
Rops11g02142 360 CDD AP2 46 115 IPR001471 GO:0003700|GO:0006355
Rops11g02142 360 FunFam AP2-like ethylene-responsive transcription factor 46 115 - -
Rops11g02142 360 SUPERFAMILY DNA-binding domain 148 209 IPR016177 GO:0003677
Rops11g02142 360 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 238 - -
Rops11g02142 360 Pfam AP2 domain 47 105 IPR001471 GO:0003700|GO:0006355
Rops11g02142 360 Pfam AP2 domain 148 199 IPR001471 GO:0003700|GO:0006355
Rops11g02142 360 SUPERFAMILY DNA-binding domain 46 115 IPR016177 GO:0003677
Rops11g02142 360 FunFam AP2-like ethylene-responsive transcription factor 148 209 - -
Rops11g02142 360 CDD AP2 148 209 IPR001471 GO:0003700|GO:0006355
Rops11g02142 360 Gene3D AP2/ERF domain 47 115 IPR036955 GO:0003700|GO:0006355
Rops11g02142 360 Gene3D AP2/ERF domain 148 209 IPR036955 GO:0003700|GO:0006355
Rops11g02142 360 MobiDBLite consensus disorder prediction 1 30 - -
Rops11g02142 360 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02142 Rops-Chr11 35498129 35501500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02142 43 211 AP2-EREBP Transcription Factor Family AT5G57390 73.373 1.03e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Rops11g02142 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02142 K09285 - gmx:100804555 583.948