Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02134 ATGGGAAAGAAGGTGAAACTTGCTTTCATGATCAATGATTCTGAAAGGAGGATATCATACAGGAAAAGGAAAAAAAGTCTGATGAAGAAGATGGATGAACTCACCACCCTCTGTGGGATCGAGGCTTGTGGTATAGTTTATAGCGAATTCGATCCTCAGCCTGAGGTTTGGCCATCCCCATTGAAGGCTGAAAAGATTATCACCAAGTTCAGGAATTATTCTGAATTTGATCTTGGAAAGAATAAGAAGAAGCTGGACCACGAGAGCTATCTAAAGCAAAAGATTCTCAAGGCCAAAGAGCAATTAGTGAAGATGAAGAAGAATAATAGGGAGAATGAGATTTTATTGCTATTGTTTCAATATCTTGCAGGAGTAAATATTTTGGACAATCTCAACATAGTAGATTTGAATGATCTAACACGGCTCAATGACGAGAAGCTGAAAGAGATTAGTTTGAGGATGGTCGAATTGGACAAGAAGGCTTTAGCATCTCAGAGCCAAGCTCAAATTGTGGCATCAAGGGTGGTAGATGGATTAACCAACCAAGGAAACATGGCACAGGTGGATCTTGACCTAGGGTTGGAGATGAACCTGGATGATACACTAGATCTACAATCGATTTTGAACTCGTTCAATGATTTAGATAATGCAATGTCACCATTTCAATTACCATAA 675 0.3926 MGKKVKLAFMINDSERRISYRKRKKSLMKKMDELTTLCGIEACGIVYSEFDPQPEVWPSPLKAEKIITKFRNYSEFDLGKNKKKLDHESYLKQKILKAKEQLVKMKKNNRENEILLLLFQYLAGVNILDNLNIVDLNDLTRLNDEKLKEISLRMVELDKKALASQSQAQIVASRVVDGLTNQGNMAQVDLDLGLEMNLDDTLDLQSILNSFNDLDNAMSPFQLP* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02134 224 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Rops11g02134 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
Rops11g02134 224 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Rops11g02134 224 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Rops11g02134 224 CDD MADS_SRF_like 1 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops11g02134 224 Gene3D - 12 97 IPR036879 GO:0003677|GO:0046983
Rops11g02134 224 PANTHER MADS BOX PROTEIN 3 151 - -
Rops11g02134 224 FunFam Agamous-like MADS-box protein AGL80 12 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02134 Rops-Chr11 35381478 35382152 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02134 3 215 Type I MADS-box Gene Family AT5G48670 38.028 4.38e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops11g02134 SRF-TF 1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02134 - - gmx:100813231 186.037