Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02131 ATGACTAGAAAGAAGGTGGAGCTTACATACATAAGTAGTGACTCGAAGAGGAAGGCATCACTCAAGAAAAGGAAAAATGATTTGATCAAGAAGATTGATGAAATTAGCACCCTTTATGGGATCGAGGCATGTGTTATAATCTATAATCCAAATGATCCTCAACCAGAGATTTCTAGAAATGTTAACATGATGGATCTCAATGATTTGTCCTGGTTGATTTATCAAAACTTGAAGGAAATTGAACGAAAGATCAATCAGATCCAAGCCCTAGAGGCTATTGAAAATGGAGTGGAAATTGTTAACGGAGGAGGGCAAGCACGCATGGTTTATGACCAAATGTTGGACACCATCCAAAAGAAGCATTTGGCTGTAGATTTCATCAATGGTGGTGTGCTACCATTTCGACATTTTAATGTCCAAAATGACCATTGGCCAAATCCATAA 444 0.3806 MTRKKVELTYISSDSKRKASLKKRKNDLIKKIDEISTLYGIEACVIIYNPNDPQPEISRNVNMMDLNDLSWLIYQNLKEIERKINQIQALEAIENGVEIVNGGGQARMVYDQMLDTIQKKHLAVDFINGGVLPFRHFNVQNDHWPNP* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02131 147 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Rops11g02131 147 CDD MADS_SRF_like 2 56 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops11g02131 147 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops11g02131 147 Gene3D - 14 119 IPR036879 GO:0003677|GO:0046983
Rops11g02131 147 SUPERFAMILY SRF-like 1 60 IPR036879 GO:0003677|GO:0046983
Rops11g02131 147 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Rops11g02131 147 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops11g02131 147 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02131 Rops-Chr11 35320898 35321640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02131 1 57 Type I MADS-box Gene Family AT3G05860 56.140 8.52e-17 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops11g02131 SRF-TF 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02131 - - gmx:100797590 88.9669