Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02128 ATGGCCCAATCCCAGTGGTCTCACATTTTGGCTATAACCACAGCAGCCACCCTTTTCCTATGCAGCAGTTTTGCAACAGACCCATTCCGACAACAAAGCCAGAAGGACAGGGTGGGTAGGCTCCCAGGTCAAAACTTCAATATCAGCTTTGCACACTATTCTGGCTACATCACTGTGAATGAAAAAGCTGGGAGGTCACTGTTTTACTGGTTCATTGAGGCAGATAAGCATCCTCAGTCCAAACCCCTTGTTTTATGGCTCAATGGAGGGCCTGGTTGTTCATCTATTGCTTTTGGGGAGGCAGAGGAAATTGGGCCATTTCATATAAAGCCAGATGGCAAGACCCTTTATCTTAATCCTTATTCTTGGAATCAAGTTGCCAACATTCTTTTTATTGACTCTCCTGTGGGAGTTGGATTTTCATATTCAAACACTTCTTCTGACATTCTGAACAATGGTGATAAGAGGACAGCTGAGGACTCTTTGATATTTCTATTGAAGTGGTTTGAGCGTTTTCCCCAGTATAAAAAAAGAGACTTTTTCATCAGTGGTGAGAGCTATGCAGGACATTATGTTCCTCAACTTTGCCAAGCTATTGTGAAGCACAGCTTGGCTACTAAAGAAAATGCTATAAATCTGAAAGGTTGCATGGTAGGAAATGCTCTAACAGATGATTTTCATGATCAACTAGGGATTTTCGAGTTTATGTGGTCAAGTGGCATGATTTCGGATCAAACATACAAGCTCTTGAATCTGCTATGTGATTTTCAGTCAGTCCTACACACATCAGATTCATGTGAAAAAATTATGGAAATTGCTGATAAAGAAATGGGTAATATAGATCCATACAGTATCTTTACTCCTCCATGTCATGCTAATGTTAGCCAGTCAAATCAGCTGGTGAAAAGAAAGCATAGAGTTGGTATACTGAGAGCTGGGTATGATCCTTGCACTGAGAAGCACTCCACCATATACTTCAATCTACCTGAGGTCCAAAGGAGTCTTCATGTTGATCCAGATCATAAGCCTGCTAAATGGGAGACCTGCAGTGAAGTGGTAAATACCAACTGGAAGGATTCTCCAAGATCAGTGCTCAATATTTATCATGAACTTATTCATTTGGGACTGCGGATATGGATGTTCAGTGGTAATACAGATGCAGTAATCCCTGTGACATCTACTCGCTATAGCATAAATGCTCTCAAGCTTCCAACTGTGAGCCCCTGGCGTGCATGGCATGATGATGGAGAGGTAGGAGGATGGACCCAAGAATATGCTGGACTCACTTTTGTAGTTGTACGGGGTGCAGGGCACGAAGTTCCTCTGCATAGACCAAAACTTGGTCTTGCATTGTTCAAAGCCTTCTTAGTAGGAACCTCCATGCCCACCCTTGAACCAGTCAGTGCCTCTTAA 1413 0.4268 MAQSQWSHILAITTAATLFLCSSFATDPFRQQSQKDRVGRLPGQNFNISFAHYSGYITVNEKAGRSLFYWFIEADKHPQSKPLVLWLNGGPGCSSIAFGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFIDSPVGVGFSYSNTSSDILNNGDKRTAEDSLIFLLKWFERFPQYKKRDFFISGESYAGHYVPQLCQAIVKHSLATKENAINLKGCMVGNALTDDFHDQLGIFEFMWSSGMISDQTYKLLNLLCDFQSVLHTSDSCEKIMEIADKEMGNIDPYSIFTPPCHANVSQSNQLVKRKHRVGILRAGYDPCTEKHSTIYFNLPEVQRSLHVDPDHKPAKWETCSEVVNTNWKDSPRSVLNIYHELIHLGLRIWMFSGNTDAVIPVTSTRYSINALKLPTVSPWRAWHDDGEVGGWTQEYAGLTFVVVRGAGHEVPLHRPKLGLALFKAFLVGTSMPTLEPVSAS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02128 470 FunFam Carboxypeptidase 364 458 - -
Rops11g02128 470 ProSitePatterns Serine carboxypeptidases, histidine active site. 428 445 IPR033124 GO:0004185
Rops11g02128 470 FunFam Carboxypeptidase 313 461 - -
Rops11g02128 470 ProSitePatterns Serine carboxypeptidases, serine active site. 182 189 IPR018202 GO:0004185
Rops11g02128 470 Gene3D - 317 355 - -
Rops11g02128 470 Gene3D alpha/beta hydrolase 32 292 IPR029058 -
Rops11g02128 470 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 39 445 IPR001563 GO:0004185|GO:0006508
Rops11g02128 470 SUPERFAMILY alpha/beta-Hydrolases 34 461 IPR029058 -
Rops11g02128 470 FunFam Carboxypeptidase 33 292 - -
Rops11g02128 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Rops11g02128 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185|GO:0006508
Rops11g02128 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185|GO:0006508
Rops11g02128 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185|GO:0006508
Rops11g02128 470 Gene3D - 364 458 - -
Rops11g02128 470 Pfam Serine carboxypeptidase 42 457 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02128 Rops-Chr11 35250021 35255576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02128 344 461 Calmodulin-binding Proteins AT2G22960 25.210 1.04e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02128 K16297 - gmx:100805227 773.467