Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02112 ATGGAAGCTAGAACTGGACTTTTTGCAGGGTCTAATAATAGCAATGAGCTTGTGGTCATCCAAGGAAATGATGAGCCTAAGGCTGTGAAGAACTTAGATGGTCAGCTTTGTGAGATATGTGGCGATTCTGTGGGGCTTACGGTGGATGGAGACTTGTTTGTAGCTTGTGAAGAGTGTGGCTTCCCAGTGTGCAGGCCATGCTATGAGTATGAAAGAAGGGAAGGGACTCAAGTTTGCCCTCAGTGCCATACAAGATACAAACGTATCAAAGGAAGCCCAAGAGTGGAGGGAGATGAAGATGAAGATGATGTGGATGATATTGAACATGAATTTAAAATGGAAGAAGAAAAGTACAAGCTTAAGCATGAAGAGATGCTGCAAGGGAAGATGAACCGTGGAGATGATGAGAATGCTAAATCAATACCGGTGAATGGGGAGCTTCCCATATCTTACAGCATTGGAGAACTTGGTGGCGCCAAATTGGATGACAAGGAGAAAATAGATGACTGGAAGTTACACCAAGGCAATCTCTTGCCTGAAACTGATGCCTCAGTTGATCCTGAAAAGGCCATGAGAGATGAAACTAGACAGCCACTCTCAAGGAAAGTGTCAATACCTTCAGGCAAACTCAGTCCTTATAGAATGATGGTTGCGGCTCGGCTCATTGTTTTAGTACTCTTCTTTCAGTACAGAATCTTCCACCCAGTACCTGATGCAATTGGACTCTGGTTCACATCTGTAGTATGTGAAATCTGGCTTGCATTGTCATGGATGGTTGATCAGCTTCCTAAATGGTTTCCCATTAATCGTGAGACATACCTTGATCGTCTTTCAATCAGGTTTGAACCGGAGAACAAGCCTAATATGCTTTCTCCAATAGATATCTTTGTCACAACCGTAGATCCAATCAAGGAACCTCCTCTAGTTACAGCCAATACTGTTCTTTCAATCCTGGCTTTGGATTATCCTGCTCATAAAATCTCATGCTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCACTTCAAGAAACTGCTGAATTTGCTCGAAAGTGGGTACCCTTTTGCAAAAAATTCTCTGCAGAACCTAGAGCACCAGAGAAGTACTTCTCTGAGAAGATAGATTTTCTAAAGGATAAGCTTCAATCCACATATGTAAAAGAACGTCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGGATAAATGCACTTGTGGCTAAATCTATGAGAGTTCCCCCAGAAGGGTGGACCATGAAAGATGAGACACCATGGCCAGGAAACAATACAAAGGATCATCCAGGTATGATTCAAATCCTTCTTGGTCATAATGGAGGCCATGAAGGTAATGAACTTCCATGTCTTGTCTACACGTCTCGTGAGAAAAGGCCTGCATTTCAACACCACGGCAAAGCTGGTGCAGTGAATGCCTTGCTTCGTGTATCAGCAGTGCTAAGCAATGCTCCTTTCGTGCTGAACTTGGATTGCAATCATTATGTGAATAACAGCAAAGTCGTCAGAGAAGCCATGTGTTTCTTTATGGACATACAACTTGGGAATGGCATTGGCTTTGTCCAGTTTCCATTAAGATTTGATAGCCTCGATAGGCATGATCGTTATGCTAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGAATTCAGGGACCTGCTTATGTTGGTTCAGGATGTATCTTCAGAAGGAAAGCTTTAAATGGCTTTGATCCACCAAAGGCTTCAAAACGCCCAAGAACGGTACAAGTGCATTCAAAACAGGATGAAAATGAAGAGGATGCAAGCATAACAGCAGCAGCAGATGAAGACAAGCAGCTATTGAAATCAGAGATGAATGATGAAAATAAATTTGGAAAGTCTACACTTTTTATGAATTCTTCATTAACAGAAGAAGCTGGTGCTGATCCTTCTTCAAGTCAAGAAGCCCTGGTTAAAGAAGCCATCAATGTCATGAATTGTCGCTATGAAGACAGAACTCTCTGGGGATATGAGGTTGGTTTGAGCTATGAATCTATAGCATCAGATATTCTGACAAGTTTCAAGATGCATTCTCGTGGTTGGAAATCTGTATACTGCATGCCAAAGAGACCTGCATTCCGGGGTACAGCTCCTATCAACCTTACAGAACGACTTAACCAGGTGCTTAGATGGGCAGTGGGATCACTTCAGATCCTATTCAGTCGCCATTGCCCATTATGGTATGGCTTCGGGGAAGGAAGACTCAAGGGGCTTCAGAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTAGTATATTGCCTCGTTCCTGCCATTTGCTTGCTCACTGATAAATTCATCACACCATCGGTTGGCACTTTTGCCAGTCTAATCTTCATTGCTCTTTTCATCTCAATCTTTGCATCGGCTATTCTTGAATTGAGATGGAGTGGAGTTAGCCTTGAGGAATGGTGGAGAAACCAACAATTTTGGGTCATTGGAAGTGTATCTTCACACTTATTTGCCATTGTACAAGGCTTTATGGGAGCCTTGGGTAGGGGTAATGCAAACTTCAATGTGGTATCAAAGGCACCAGATGATGTGGAGTTTCATGAATTGTATACCATAAGATGGACTGCACTACTAATACCTCCAACCACAATCATAATAATCAACCTTGTTGGTATTGTAGCTGGGTTCACAGATGCTGTTAATAGTGGTGAACATACTTGGGGAGCACTACTTGGGAAGCTCTTCTTTTCTTTATGGGTTATTGCACATCTATACCCATTCCTTAAAGGTCTTATGGGGAGGCAGAACAGAACACCAACTCTTATTGTCATTTGGTCAGTGCTTTTGGCTTCTATCTTCTCCTTGGTTTGGGTAAGAGTTGACCCTTTTGTGTTGAAAACAAAAGGACCTGATGTCAAGCAATGTGGAATCAGTTGCTGA 2964 0.4238 MEARTGLFAGSNNSNELVVIQGNDEPKAVKNLDGQLCEICGDSVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKMEEEKYKLKHEEMLQGKMNRGDDENAKSIPVNGELPISYSIGELGGAKLDDKEKIDDWKLHQGNLLPETDASVDPEKAMRDETRQPLSRKVSIPSGKLSPYRMMVAARLIVLVLFFQYRIFHPVPDAIGLWFTSVVCEIWLALSWMVDQLPKWFPINRETYLDRLSIRFEPENKPNMLSPIDIFVTTVDPIKEPPLVTANTVLSILALDYPAHKISCYVSDDGASMLTFEALQETAEFARKWVPFCKKFSAEPRAPEKYFSEKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMKDETPWPGNNTKDHPGMIQILLGHNGGHEGNELPCLVYTSREKRPAFQHHGKAGAVNALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRHDRYANKNTVLFDINLRCLDGIQGPAYVGSGCIFRRKALNGFDPPKASKRPRTVQVHSKQDENEEDASITAAADEDKQLLKSEMNDENKFGKSTLFMNSSLTEEAGADPSSSQEALVKEAINVMNCRYEDRTLWGYEVGLSYESIASDILTSFKMHSRGWKSVYCMPKRPAFRGTAPINLTERLNQVLRWAVGSLQILFSRHCPLWYGFGEGRLKGLQRIAYINSTVYPFSSIPLLVYCLVPAICLLTDKFITPSVGTFASLIFIALFISIFASAILELRWSGVSLEEWWRNQQFWVIGSVSSHLFAIVQGFMGALGRGNANFNVVSKAPDDVEFHELYTIRWTALLIPPTTIIIINLVGIVAGFTDAVNSGEHTWGALLGKLFFSLWVIAHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRVDPFVLKTKGPDVKQCGISC* 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02112 987 SUPERFAMILY RING/U-box 22 107 - -
Rops11g02112 987 MobiDBLite consensus disorder prediction 583 607 - -
Rops11g02112 987 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Rops11g02112 987 Coils Coil 391 411 - -
Rops11g02112 987 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 282 388 IPR029044 -
Rops11g02112 987 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 447 583 IPR029044 -
Rops11g02112 987 CDD mRING-HC-C4C4_CesA 35 85 - -
Rops11g02112 987 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 195 954 - -
Rops11g02112 987 Pfam Cellulose synthase 293 593 IPR005150 GO:0016020|GO:0016760|GO:0030244
Rops11g02112 987 Pfam Cellulose synthase 601 981 IPR005150 GO:0016020|GO:0016760|GO:0030244
Rops11g02112 987 MobiDBLite consensus disorder prediction 593 607 - -
Rops11g02112 987 FunFam Cellulose synthase 19 110 - -
Rops11g02112 987 SUPERFAMILY Nucleotide-diphospho-sugar transferases 305 806 IPR029044 -
Rops11g02112 987 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02112 Rops-Chr11 34812278 34817562 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02112 1 987 Cell Wall Biosynthesis AT5G17420 65.534 0.0 1402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02112 K10999 - gmx:100777270 1709.5