Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02110 ATGGAAGCCAGCGCTGGACTGGTCGCTGGATCACACAACCGCAATGAACTTGTGGTCATTCATGGTCATGAAGAGCACAAACCTTTGAAAAACTTGGATGGCCAAGTGTGTGAGATTTGTGGTGATGGCGTGGGACTCACGGTGGATGGAGACTTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCAGTGTGCCGGCCATGCTATGAATATGAAAGGAGAGAAGGGAGCCAGAATTGTCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGCCCAAGGGTTGAGGGAGATGATGATGAAGAAGATGTGGATGATATTGAGCATGAATTCAGTATTGATGACCAAAAGAACCAACATGGCCATGCTGCAGAAGCCATGCTTCATGGGAAGATGAGCTATGGAAGAGGTCCTGAAGATGATGAGAATTCCCAGTTCCCACCTGTAATTGCTGGTGGTCGTTCTAGACCTGTAAGTGGGGAGTTTTCAATAGCTTCTCATGGTTATGGGGAGCAGATGTTATCTTCTACATTACATAAACGAGTGCATCCATATCCAGTGTCTGAACCTGGAAGTGCAAGATGGGATGAAAAGAAAGAGGATGGATGGAAAGATAGAATGGATGACTGGAAATTGCAGCAAGGAAATTTGGGGCCTGAACCTGATGAAGATCCAGATGCCGCCATGTTAGATGAAGCAAGGCAGCCACTGTCAAGGAAAGTGCCAATAGCATCTAGCAAAGTCAATCCATATAGAATGGTGATTGTGGCACGGCTTGTTATTCTTGGTTTCTTTCTCAGATACAGAATTTTGAACCCAGTACATGATGCAATGGGGCTATGGCTAACCTCTATTATATGTGAAATCTGGTTTGCTTTTTCTTGGATTCTCGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGATCGTCTTTCCATCAGGTATGAGCGTGAAGGTGAACCTAACATGCTTGCTCCAGTAGATGTCTTTGTTAGTACTGTGGATCCAATGAAGGAACCTCCTCTGGTTACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAGATATCATGCTACATTTCTGATGATGGAGCTTCAATGTGTACATTTGAATCCCTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTGCCATTTTGTAAGAAATTTTCTATAGAACCTCGCGCACCTGAGATGTACTTCAGTGAGAAGATTGACTACCTAAAGGACAAAGTGCAACCCACCTTTGTTAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCAAAAGCACAGAAAGTTCCTCCAGGAGGGTGGATCATGCAGGATGGGACACCATGGCCAGGGAACAACACTAAGGATCATCCAGGGATGATTCAAGTCTTTCTTGGAAGCAGTGGAGGTCTTGATACTGAAGGGAACCAGCTTCCTCGCCTTGTTTATGTTTCCAGAGAGAAAAGACCTGGTTTTCAACATCACAAGAAAGCTGGTGCTATGAATGCCCTGGTTCGGGTCTCAGCTGTTCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATATTAATAACAGCAAGGCTGCTCGAGAGGCCATGTGCTTCTTGATGGACCCTCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAGAGATTCGATGGTATTGATACTCATGATCGTTATGCCAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTTTATATGTGGGCACAGGGTGTGTTTTCAGGAGGCAAGCTTTATATGGCTATAATCCTCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGACTGCTGCCCATGTTTTGGAAGCCGTAAGAAGCTTAAGCATGCAAAGAGTGATGCAAATGGAGAGGCTGCAAGCCTGAGAGGGATGGATGATGACAAAGAGCTACTCATGTCCCAGATGAATTTTGAGAAGAAATTTGGGCAGTCATCTGTTTTTGTGACTTCTACCTTGATGGAAGAGGGTGGTGTACCTCCTTCTTCCAGTCCAGCTGGCCTGCTTAAAGAAGCCATTCATGTAATCAGCTGTGGATATGAAGATAAAACTGAATGGGGACTTGAGGTTGGTTGGATCTATGGATCTATCACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGGGGTTGGAGATCCATTTACTGTATGCCAAAGAGACCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATCGTCTCAACCAGGTGCTTCGTTGGGCCCTTGGTTCCATTGAGATATTCTTCAGTCACCATTGCCCTTTATGGTATGGCTACAAGGAAAAGAAGCTAAAGTGGCTCGAGAGATTTGCCTATGCTAACACAACTGTCTACCCCTTCACCTCAATACCTCTAGTTGCCTATTGTATTCTTCCTGCAGTTTGCTTACTCACTGACAAATTCATCATGCCACCGATAAGCACTTTTGCTGGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATTGCAACTGGTGTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAGTTTTGGGTCATTGGTGGTGTATCAGCACACCTTTTTGCTGTTATACAAGGTCTTTTGAAGGTTCTGGCTGGAATTGACACCAATTTCACAGTTACATCCAAGGCAACAGATGATGAGGATTTCGGAGAATTATACACCTTCAAGTGGACTACTCTCCTAATTCCTCCAACCACTATCTTAATCATCAATATAGTTGGTGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGATACCAATCTTGGGGACCACTATTTGGAAAGCTCTTCTTTTCATTCTGGGTGATTGTCCATCTGTATCCATTCCTCAAAGGTTTGATGGGTAGGCAAAACCGTACACCCACCATTGTTGTGATTTGGTCAGTGCTATTGGCTTCTATTTTCTCCTTGCTTTGGGTGAGAATTGATCCATTTGTCCTCAAGACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGCTAA 3120 0.4423 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFSIDDQKNQHGHAAEAMLHGKMSYGRGPEDDENSQFPPVIAGGRSRPVSGEFSIASHGYGEQMLSSTLHKRVHPYPVSEPGSARWDEKKEDGWKDRMDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILGFFLRYRILNPVHDAMGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFESLSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGSSGGLDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPLYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKLKHAKSDANGEAASLRGMDDDKELLMSQMNFEKKFGQSSVFVTSTLMEEGGVPPSSSPAGLLKEAIHVISCGYEDKTEWGLEVGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGYKEKKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGVLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEDFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02110 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Rops11g02110 1039 SUPERFAMILY Nucleotide-diphospho-sugar transferases 344 843 IPR029044 -
Rops11g02110 1039 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Rops11g02110 1039 SUPERFAMILY RING/U-box 21 105 - -
Rops11g02110 1039 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 485 622 IPR029044 -
Rops11g02110 1039 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 234 1006 - -
Rops11g02110 1039 Coils Coil 429 449 - -
Rops11g02110 1039 CDD mRING-HC-C4C4_CesA 35 85 - -
Rops11g02110 1039 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Rops11g02110 1039 FunFam Cellulose synthase 19 110 - -
Rops11g02110 1039 Pfam Cellulose synthase 331 1033 IPR005150 GO:0016020|GO:0016760|GO:0030244
Rops11g02110 1039 FunFam Cellulose synthase 448 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02110 Rops-Chr11 34800315 34806134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02110 1 1039 Cell Wall Biosynthesis AT5G17420 85.673 0.0 1851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02110 K10999 - gmx:100815436 2071.59