Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02097 ATGTTTGACTGTGGTTACAAGTCACAATATGTGGGTGGGCAGCGGGAAAAATTTGTGAGGTTGGATGACTTGGATTCTAGACTATCATCATCTTCTGACGCTGGAGTTAAAACATGTGGATTTAGTATTGATAAATTAAGCCATGGTGGCCATGGAAGCAGTGCAACCTCTAGGTCTTTTAAAAGAGGAATGAGAAAGGGATCTGAAGGACTGAAGTCAATTGGCCGATCACTTGGATTTGGGGTATCTAGGGCTGTGTTCCCGGAAGATCTTAAAGCTTCAGAAAAAAAAATATTTGACCCTCAAGACGAATTTTTACTCTTCTGTAATAAGCTTTTTGTCATCTCATGCATTTTGGCTATTTCTGTGGATCCACTGTTTTTTTATCTCCCTGTCATCAATGATTCATTACGCTGTCTTGGTATAGATCGCAAGTTAGCAATTATAGTAACCACCTTGAGGACTGTAATTGATGCTTTCTATCTTATACACATGGCTCTTAAGTTTCGTACTGCTTATATTGCTCCATCATCTCGTGTTTTTGGACGGGGTGAGCTCGTGATTGATCCAGCACAGATAGCCAAACGATACTTACGGCGATATTTCATCATTGATTTCCTATCAGTGTTGCCCTTACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTTGCAACAAAGCAGGCCTTGCTGTTCATTATCTTGCTTCAGTACATTCCTAGATTTCTCCGGATGGTACCATTGACTTCCGAACTTAAAAGAACAGCTGGTGTCTTTGCTGAAACTGCTTGGGCAGGTGCCGCATATTATTTGCTATTATTCATGCTCGCCAGTCATATAGTTGGGTCTTTTTGGTACTTGTTAGCTGTTGAGCGCAATGACTTTTGCTGGCAGAAGGCTTGTAGTGACAATGGGTACAACAAAAAATTCTTGTATTGTGGCAACCAATACATGGAAGGTTATGGTACCTGGCAGAATAGAAGTGAAGCTATTCTTATGTCGAAGTGCTCCACAACTGATGATAATCCACCTTTTAACTATGGAATTTTCACACAAGCCTTGTCATCTGGTATTGTTTCATCTAATGAGTTCTTCTCCAAGTATTGTTACTGTTTATGGTGGGGGCTCCAGAATTTAAGTACACTTGGACAGGGGCTTCAAACAAGCACCTACACTGGGGAGGTTATCTTTTCAATAGCATTAGCCATAGCTGGCCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGACGTATCTTCAGTCTCTTACCATTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTGCCTCAAGAGCTTAGAGAGCGTGTGAGGCGATATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGATGAAGAATGTTTGGTTCAGAGTCTCCCAAAGGATCTTCAAAGAGACATTAAGCGTCACCTCTGTCTGGCTTTAGTGAGAAGGGTTCCACTATTTGAGAGCATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAGCCTTGTTTATTTACAGAAAGTACTTACATCGTCCGGGAAGGTGATCCAGTAGATGAGATGCTTTTCATCATTCGTGGTCGCCTTGAGAGTGTTACCACAGATGGCGGGAGGAGTGGATTTTTTAATCGCGGTTTCTTAAAAGAGGCTGACTTCTGTGGAGAGGAGCTTTTAACCTGGGCACTGGATCCCAAATCTGGCTCTAACCTCCCATCTTCTACTCGAACAGTGAAGGCTTTAACCGAGGTTGAGGCTTTTGCTTTAACTGCAGAAGAGTTAAAATTTGTTGCCAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAGCACACCTTCCGCTTTTACTCCCAACAATGGAGGACTTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGTATTCCAAGAGGAAAATTATGGAGCTTCGTCGAAAGGAAGAACCTGAAGAATCAGAAGGAACTCGCAGCAATGCTAGTGGCAGTTCATACAGCCTTGGTGCCACCTTCTTGGCCTCAAGATTTGCCGCGAATGCTCTTCGTGGTGTTCATCGCAATCGGAATGCTAAGAGTGCCAGGGAGTTGATGAAACTACAGAAACCTCCAGAACCTGACTTTACTGCAGATGATGTGTAA 2196 0.4317 MFDCGYKSQYVGGQREKFVRLDDLDSRLSSSSDAGVKTCGFSIDKLSHGGHGSSATSRSFKRGMRKGSEGLKSIGRSLGFGVSRAVFPEDLKASEKKIFDPQDEFLLFCNKLFVISCILAISVDPLFFYLPVINDSLRCLGIDRKLAIIVTTLRTVIDAFYLIHMALKFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDFLSVLPLPQIVVWRFLQRSKGSDVLATKQALLFIILLQYIPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWQKACSDNGYNKKFLYCGNQYMEGYGTWQNRSEAILMSKCSTTDDNPPFNYGIFTQALSSGIVSSNEFFSKYCYCLWWGLQNLSTLGQGLQTSTYTGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEECLVQSLPKDLQRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKIMELRRKEEPEESEGTRSNASGSSYSLGATFLASRFAANALRGVHRNRNAKSARELMKLQKPPEPDFTADDV* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02097 731 ProSiteProfiles IQ motif profile. 641 670 IPR000048 GO:0005515
Rops11g02097 731 MobiDBLite consensus disorder prediction 711 731 - -
Rops11g02097 731 SMART cnmp_10 505 636 IPR000595 -
Rops11g02097 731 Pfam Cyclic nucleotide-binding domain 527 616 IPR000595 -
Rops11g02097 731 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
Rops11g02097 731 Gene3D - 111 430 - -
Rops11g02097 731 ProSiteProfiles cAMP/cGMP binding motif profile. 505 635 IPR000595 -
Rops11g02097 731 Gene3D Jelly Rolls 503 623 IPR014710 -
Rops11g02097 731 FunFam Cyclic nucleotide-gated ion channel 1 432 496 - -
Rops11g02097 731 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 90 726 - -
Rops11g02097 731 FunFam Cyclic nucleotide-gated ion channel 1 503 621 - -
Rops11g02097 731 SUPERFAMILY Voltage-gated potassium channels 101 427 - -
Rops11g02097 731 Gene3D Helix hairpin bin 433 496 - -
Rops11g02097 731 CDD CAP_ED 505 636 IPR000595 -
Rops11g02097 731 Pfam Ion transport protein 110 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02097 Rops-Chr11 34528498 34545809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02097 1 730 Ion Channels AT2G23980 76.533 0.0 1161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02097 K05391 - gmx:100820202 1336.24