Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02088 ATGGGTTTAGGAGTATTTGGTTCTGTTCTAGTTCTGACACTGTTTTTCAAGCATTTAGCATCTCAGCAACCAAATACTGATGATTTCTTTGTGTCTGAGTTCTTGAAGAAGATGGGTTTAGCATCCTCCCAGGCCTACAATTTCTCTGCTTCTGTTTGTTCATGGCAAGGGGTTATCTGTGATGCTAAGAGAGAACGTGTTGTTGAGTTAGTTGTTTCTGGAATGGGCCTCTCTGGTTCTATTCCAGATAATACCATAGGCAAGCTCAGCAAGCTTCAAACTTTGGACCTCAGCAGCAACAAAATCACTGGCTTGCCTTCAGATTTCTGGAGTTTAAGCTTGCTCAAGAGCCTTAACCTCTCCTCTAATCAGATTTATGGTTCACTGACTAACAACATTGGAAACTTTGGTTTGCTTGAAACATTTGACTTATCCAACAACAATTTCTCAGGGGAAATTCCTGAAGCTATTGGTTCCTTTGATGGTCTGAAGGTCCTCAAACTTGACCACAACAGGTTTGAACAAAGCATACCTTCTGGGATTCTCAAGTGCAAGTCTCTAGTTTCAATTGATCTTTCATCAAATCAGCTAAGTGGGGCACTTCCCGATGGTTTTGGTGCTGCTTTTCCAAAACTCATTACCTTGAACCTTGCTGGGAATAGCATTGGTGGACATGATTCACATATTTCTGGCTTTAAGTCCATTGTGAGTCTCAACATATCTGGCAATTCCTTTCAGGGTTCTGTCATGAGCTTGTTCCGAGGAAGGCTAGAAGTCTTGGACCTTAGCAGAAACCAATTTCAAGGTCACATTTCTCAGGTACAGTCCATCTCTAATTACAATTGGTCTCATATAGTTTATCTGGATTTGTCAGAGAATCAGCTACGTGGGGAGATTTTTCAAAATCTGAATGAATCCCTGAATCTAAAGCACCTTAATCTTGCTCACAATAGGTTTACCAAACAGAAATTCCCCAATATTGAAATGCTTTCAGGATTGGAATATCTGAACTTGTCCAAAACTAGTCTGATTGGTTATATTCCTGCTGAAATCTCACAACTAAATAATTTGAAAGCACTTGATATTTCAATGAATCATCTTATAGGGCAAATTCCCTTACTAAAGAATAAAAACCTCCAAATTCTTGACCTTTCAAACAACAATTTGAGTGGAGAAGTCCCTCCATCAGTCTTAGAGAAACTCCCATGGATGGAGAAATACAACTTCTCTTACAATAACTTAACCCTTTGTGCCTTGGAAATCAAACCAGCTATCCTCAAAACAGCATTCTTTGGACTAGTGAACAGTTGCCCCCTTGCTGCAAACCCAAGTCTTTTCAAGAAAAAATCCACTGAACATAAGGGAATGAAGCTAGCTCTAGCATTGACCCTATCAATGATCTGCTTGCTTGCTGGAGTTTTGTTACTAGCAATTGGTTGCCATAGGAAAAGAAAATCATGGCCAGTTAAGCAAACTTTATACAAAGAAGAACAAAATATGTCAGGTCCCTTTTCATTCCACACTGATTCCAACACTTGGGTGGCTGATGTTAAGCAAGCAACATCTGTCCCGGTAGTAATCTTTGAGAAGCCACTGTTGAACATCACATTTGCAGACCTCTTGGCTGCAACCTCAAATTTTGATAGGGGTATCCTTTTGGCTGAAGGGAAATTTGGGCCAGTTTACAGATGTTTTCTACCTGGTGGTATTCATGTAGCAGTTAAAGTTCTCGTCATTGGATCTACCTTAACAGATAAAGAAGCTGCAAGAGAACTTGAGTATCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTCTAACTGGATATTGTGTAGCTGGGGATCAGAGGATTGCAATATATGATTACATGGAGAATGGGAACTTGCAAAATTTGCTTTATGACTTGCCACTTGGGGTACTACAAAGGACAGATGATTGGAGCACAGATACATGGGAAGAAGATGATAGTAATGGGATTCAAAATGTTGGGTCTGAAGGAATGCTCACAACTTGGAGATTTCGCCACAAGATTGCCCTTGGCACTGCAAGAGCATTGGCATTTCTACATCATGGATGCTCACCCCCAATTATTCATAGAGATGTCAAAGCTAGCAGTGTTTATTTGGATTATAACTTGGAGCCAAGATTGTCTGATTTTGGGCTGGCTAAAATTTTTGGAAATGGCTTGGATGAGGAGATTGCACTTTCTTCACCAGGTTATGCTCCACCAGAGTTTTCTCAACAAGAATTTGACACCCCAAGTCCAAAATCTGATGTGTACTGTTTTGGGGTTGTTCTCTTTGAGCTTCTAACAGGGAAGAAGCCAGTTGGAGATGAGTATCCTGATGAGAAAGAAGCAACATTGGTAAGTTGGGTCAGAGGACTTGTAAGAAATAACAAAGCTTCAAGAGCTCTTGATCCAAAAATTCGCGATACAGGAGCAGAAGACCAAATGGAGGAGGCCCTTAAGATTGGTTATCTTTGCACTGCTGATCTTCCTTCCAAGCGACCAAGCATGCAGCAGATAGTTGGACTTCTTAAAGATATTGAACCTAATGGTAATTAG 2565 0.4055 MGLGVFGSVLVLTLFFKHLASQQPNTDDFFVSEFLKKMGLASSQAYNFSASVCSWQGVICDAKRERVVELVVSGMGLSGSIPDNTIGKLSKLQTLDLSSNKITGLPSDFWSLSLLKSLNLSSNQIYGSLTNNIGNFGLLETFDLSNNNFSGEIPEAIGSFDGLKVLKLDHNRFEQSIPSGILKCKSLVSIDLSSNQLSGALPDGFGAAFPKLITLNLAGNSIGGHDSHISGFKSIVSLNISGNSFQGSVMSLFRGRLEVLDLSRNQFQGHISQVQSISNYNWSHIVYLDLSENQLRGEIFQNLNESLNLKHLNLAHNRFTKQKFPNIEMLSGLEYLNLSKTSLIGYIPAEISQLNNLKALDISMNHLIGQIPLLKNKNLQILDLSNNNLSGEVPPSVLEKLPWMEKYNFSYNNLTLCALEIKPAILKTAFFGLVNSCPLAANPSLFKKKSTEHKGMKLALALTLSMICLLAGVLLLAIGCHRKRKSWPVKQTLYKEEQNMSGPFSFHTDSNTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGILLAEGKFGPVYRCFLPGGIHVAVKVLVIGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQRTDDWSTDTWEEDDSNGIQNVGSEGMLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGNGLDEEIALSSPGYAPPEFSQQEFDTPSPKSDVYCFGVVLFELLTGKKPVGDEYPDEKEATLVSWVRGLVRNNKASRALDPKIRDTGAEDQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPNGN* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02088 854 FunFam Calmodulin-binding receptor kinase CaMRLK 255 373 - -
Rops11g02088 854 Pfam Protein kinase domain 553 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g02088 854 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 106 201 - -
Rops11g02088 854 Gene3D Ribonuclease Inhibitor 279 374 IPR032675 -
Rops11g02088 854 SMART LRR_typ_2 160 184 IPR003591 -
Rops11g02088 854 SMART LRR_typ_2 112 136 IPR003591 -
Rops11g02088 854 SMART LRR_typ_2 330 354 IPR003591 -
Rops11g02088 854 SMART LRR_typ_2 89 111 IPR003591 -
Rops11g02088 854 SMART LRR_typ_2 377 400 IPR003591 -
Rops11g02088 854 SMART LRR_typ_2 185 207 IPR003591 -
Rops11g02088 854 Pfam Leucine rich repeat 80 125 IPR001611 GO:0005515
Rops11g02088 854 Pfam Leucine rich repeat 139 197 IPR001611 GO:0005515
Rops11g02088 854 ProSiteProfiles Leucine-rich repeat profile. 378 400 IPR001611 GO:0005515
Rops11g02088 854 Gene3D Ribonuclease Inhibitor 375 448 IPR032675 -
Rops11g02088 854 Gene3D Ribonuclease Inhibitor 30 175 IPR032675 -
Rops11g02088 854 Gene3D Transferase(Phosphotransferase) domain 1 649 853 - -
Rops11g02088 854 SUPERFAMILY L domain-like 46 419 - -
Rops11g02088 854 PRINTS Leucine-rich repeat signature 92 105 - -
Rops11g02088 854 PRINTS Leucine-rich repeat signature 354 367 - -
Rops11g02088 854 FunFam Putative LRR receptor-like serine/threonine-protein kinase 508 622 - -
Rops11g02088 854 SUPERFAMILY Protein kinase-like (PK-like) 524 846 IPR011009 -
Rops11g02088 854 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Rops11g02088 854 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Rops11g02088 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 280 849 - -
Rops11g02088 854 Gene3D Ribonuclease Inhibitor 176 278 IPR032675 -
Rops11g02088 854 ProSiteProfiles Protein kinase domain profile. 547 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g02088 854 Pfam Leucine Rich Repeat 378 397 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02088 Rops-Chr11 34363795 34367250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02088 66 850 Receptor kinase-like Gene Family AT4G39400 33.789 2.62e-107 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Rops11g02088 Pkinase 3.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02088 - - gmx:100807051 1470.68