Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02081 ATGACCATTATGCAGCCCTGTAGCAGAGAAATGCAAGGACTCAACCCCCTCTTGAACTCTTCTCAAATCTCTCTCCAAGACCTTCACAACAACAACAACAACAACAACACCCAGATCCAAAATTCACAAATGAACCACCATCATCAACTCAATCACACAACCCCTCACTTCGACCCAACTTCCCATGATGATTTTTTGGAACAAATACTTTCAACCCTTCCCTCTTGTTCCTGGCCTGACCTTAACCCTAATAAGCCCTTGTGGGACCCAAACAACGCTTCCGATATCAAACCCCCTGACCTCTCCGACGAAACGACGCCGTCTAGTGCCGAGAATGTCGCTTTTCCTTACGACGAACACGCCACGTTGGCTTCCAAGTTCCGTAACCACCAGATCAGCGGAGCCTCTCCGACGACCAAGGCTGTGGCGGCTCTCATGCTTCAGCAGCAGCTCCTCATGTCTAGAGGCGTCGCCGCGGATAACGGCCTCCTCCAGATGCCGTTGTCGTTGGGTGGAAACGACGTCGTTGACGGAACCTCCTTCAAATCTCACAATCCAGGTGGTGAGGCTTCAGTTCAAGCACTGTATAACGGGTTCGCTGGATCTCTGCATGGTACCGGTCAAGCCTCGAACCAGACTCAGCATTTTCAACATCCTCAGGGAAATTCGAATCCGATGCAAGGGCAGAATTTTGGAGGTGGCGCAACGAACCAAGGTCAGGCGAGTGGTTCGGGCGGTGGCACCCCGGCTCAACCGAAGCCAAGGGTTCGAGCCAGGAGGGGTCAAGCAACGGACCCACACAGCATCGCTGAAAGGTTACGAAGGGAGAGAATTGCAGAGAGAATGAAGGCACTTCAGGAACTGGTCCCCAATGCTAACAAGACAGACAAGGCATCCATGCTGGATGAGATCATCGATTACGTTAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGGGCAGCTGCTGTCGCTCCCCTTGTTGCTGATATGTCTTCTGAGGGAGGCGGTGACTGCATCCAAACAAATGGCAACAGCAACGGCGGTGGGGCCCACCCACGTAACTCAAATGGCAACAACCAAACGACGGCGTCTACCTCAAACGACAGCCTCACCATGACGGAGCACCAGGTGGCCAAGCTCATGGAAGAGGACATGGGCTCCGCCATGCAGTACCTCCAAGGCAAGGGCCTCTGCCTCATGCCAATCTCACTCGCAACCGCAATCTCCACCGCCACGTGTCACACCAGGAACCCCTTGATCAACGGCAACAACAACCAGATCCCAAATACCAACGGCGGGACCCACACGATCGCACCTAACGGCGAGGGGCCGTCATCTCCAAGCATGTCCGTGCTGACGGTGCAGTCAGCCGTGGTGGGTAACGATAGCGGCGTTAAAGACGCGGCCTCCGTTTCAAAGCCGTGA 1443 0.544 MTIMQPCSREMQGLNPLLNSSQISLQDLHNNNNNNNTQIQNSQMNHHHQLNHTTPHFDPTSHDDFLEQILSTLPSCSWPDLNPNKPLWDPNNASDIKPPDLSDETTPSSAENVAFPYDEHATLASKFRNHQISGASPTTKAVAALMLQQQLLMSRGVAADNGLLQMPLSLGGNDVVDGTSFKSHNPGGEASVQALYNGFAGSLHGTGQASNQTQHFQHPQGNSNPMQGQNFGGGATNQGQASGSGGGTPAQPKPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQTNGNSNGGGAHPRNSNGNNQTTASTSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLINGNNNQIPNTNGGTHTIAPNGEGPSSPSMSVLTVQSAVVGNDSGVKDAASVSKP* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02081 480 SMART finulus 268 317 IPR011598 GO:0046983
Rops11g02081 480 MobiDBLite consensus disorder prediction 429 455 - -
Rops11g02081 480 MobiDBLite consensus disorder prediction 203 247 - -
Rops11g02081 480 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 260 322 IPR036638 GO:0046983
Rops11g02081 480 Gene3D - 257 319 IPR036638 GO:0046983
Rops11g02081 480 MobiDBLite consensus disorder prediction 203 269 - -
Rops11g02081 480 Pfam Helix-loop-helix DNA-binding domain 267 312 IPR011598 GO:0046983
Rops11g02081 480 FunFam Transcription factor bHLH66 259 324 - -
Rops11g02081 480 MobiDBLite consensus disorder prediction 343 376 - -
Rops11g02081 480 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 62 414 - -
Rops11g02081 480 MobiDBLite consensus disorder prediction 84 110 - -
Rops11g02081 480 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 262 311 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02081 Rops-Chr11 34071547 34075436 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02081 241 479 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.162 1.46e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops11g02081 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02081 - - gmx:100807286 636.336