Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02080 ATGACCATTATGCAGCCCTGTAGCAGAGAAATGCAAGGACTCAACCCCCTCTTGAACTCTTCTCAAATCTCTCTCCAAGACCTTCACAACAACAACAACAACAACACCCAGATCCAAAATTCACAAATGAACCACCATCATCAACTCAATCACACAACCCCTCACTTCGACCCAACTTCCCATGATGATTTTTTGGAACAAATACTTTCAACCCTTCCCTCTTGTTCCTGGCCTGACCTTAACCCTAATAAGCCCTTGTGGGACCCAAACAACGCTTCCGATATCAAACCCCCTGACCTCTCCGACGAAACGACGCCGTCTAGTGCCGAGAATGTCGCTTTCCCTTACGACGAACACGCCACGTTGGCTTCCAAGTTCCGTAACCACCAGATCAGCGGAGCCTCTCCGACGACCAAGGCTGCGGCGGCTCTCATGCTTCAGCAGCAGCTCCTCATGTCTAGAGGCGTCGCCGCGGATAACGGCCTCCTCCAGATGCCGTTGTCGTTGGGTGGAAACGACGTCGTTGACGGAACCTCCTTCAAATCTCACAATCCAGGTGGTGAGGCTTCAGTTCAAGCACTGTATAACGGGTTCGCTGGATCTCTGCATGGTACCGGTCAAGCCTCGAACCAGACTCAGCATTTTCAACATCCTCAGGGAAATTCGAATCCGATGCAAGGGCAGAATTTTGGAGGTGGCGCAACGAACCAAGGTCAGGCGAGTGGTTCGGGCGGTGGCACCCCGGCTCAACCGAAGCCAAGGGTTCGAGCCAGGAGGGGTCAAGCAACGGACCCACACAGCATCGCTGAAAGGTTACGAAGGGAGAGAATTGCAGAGAGAATGAAGGCACTTCAGGAACTGGTCCCCAATGCTAACAAGACAGACAAGGCATCCATGCTGGATGAGATCATCGATTACGTTAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGGGCAGCTGCTGTCGCTCCCCTTGTTGCTGATATGTCTTCTGAGGGAGGCGGTGACTGCATCCAAACCAATGGCAACAGCAACGGCGGTGGAGCCCACCCACGTAACTCAAATGGCAACAACCAAACGACGGCGTCTACCTCAAACGACAGCCTCACCATGACGGAGCACCAGGTGGCCAAGCTCATGGAAGAGGACATGGGCTCCGCCATGCAGTACCTCCAAGGCAAGGGCCTCTGCCTCATGCCAATCTCACTCGCCACCGCAATCTCCACCGCCACGTGTCACACCAGGAACCCCTTGATCAACGGCAACAACAACAACCAGATCCCAAATACCAACGGCGGGACCCACACGATCGCACCCAACGGCGAGGGGCCGTCATCTCCAAGCATGTCCGTGCTGACGGTGCAGTCAGCCGTGGTGGGTAACGATAGCGGCGTTAAAGACGCGGCCTCCGTTTCAAAGCCGTGA 1443 0.5468 MTIMQPCSREMQGLNPLLNSSQISLQDLHNNNNNNTQIQNSQMNHHHQLNHTTPHFDPTSHDDFLEQILSTLPSCSWPDLNPNKPLWDPNNASDIKPPDLSDETTPSSAENVAFPYDEHATLASKFRNHQISGASPTTKAAAALMLQQQLLMSRGVAADNGLLQMPLSLGGNDVVDGTSFKSHNPGGEASVQALYNGFAGSLHGTGQASNQTQHFQHPQGNSNPMQGQNFGGGATNQGQASGSGGGTPAQPKPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQTNGNSNGGGAHPRNSNGNNQTTASTSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLINGNNNNQIPNTNGGTHTIAPNGEGPSSPSMSVLTVQSAVVGNDSGVKDAASVSKP* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02080 480 MobiDBLite consensus disorder prediction 342 375 - -
Rops11g02080 480 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 259 321 IPR036638 GO:0046983
Rops11g02080 480 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 72 413 - -
Rops11g02080 480 SMART finulus 267 316 IPR011598 GO:0046983
Rops11g02080 480 Gene3D - 256 318 IPR036638 GO:0046983
Rops11g02080 480 Pfam Helix-loop-helix DNA-binding domain 266 311 IPR011598 GO:0046983
Rops11g02080 480 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 310 IPR011598 GO:0046983
Rops11g02080 480 MobiDBLite consensus disorder prediction 202 246 - -
Rops11g02080 480 MobiDBLite consensus disorder prediction 202 267 - -
Rops11g02080 480 FunFam Transcription factor bHLH66 258 323 - -
Rops11g02080 480 MobiDBLite consensus disorder prediction 83 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02080 Rops-Chr11 33985636 33989516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02080 240 479 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 61.923 2.13e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops11g02080 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02080 - - gmx:100807286 638.647