Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02079 ATGGGTCGTGGAAGAATACCTATGGAACTCATTCAGAATGAAAAAGCTCGCAAGACAACATTTCAGAGGAGAAAGAACAGCTTGATGAAAAAAGCTTATGAGTTTTCCACTCTTTGTGGAGTTGATGTTTGCTTAATTATCTATGCCCCTAACTTTGATGGCCAAGGACTTGCTGAACCTGAAACATGGCCCAAAGACACAAAAGAGGTACACCGCATCATTCAAAAATATCATGACACAACTAGTGACCGGGGTCATAAGATCTATGGCGTGGAAGAGTATTATGAGGATAGAATGAAAAAGGTTGAATTCGAGATTTCCAAAATTCAGAAAGACAAGTTCAAGATCATGTTCCCAACATGGGATGACTCTTTCAATACTCTTGGAGAGGAACAATTAAGGATGTTTGTTAGCATGCTGGATGCTAAGCTTGATGCTTGTTGTCAAAGGATAAATATGCTAAAAGGAGATCTTAAGGGAAAAGCAATAGCAGAATCAGACAAGGTTCAAACACTTACTCCTTATTTAGCCTCAAATCCAAGTAGCTACCTCAATCTAATGCAGTACATCTCTCAAGTACAACTTTTCCCTCCCCCTATGAATATGAAGTCAATTAGTGATAACAACCGGCTAGCATTTTGCCCCTTTCAGCTTGGTCAAAGTTCTCAACCTTCCATGCTTCATTTTGGCCAAAATGACATGCAATTGATGGGAAAAAATGAATCAGTTGATAGGGCAAATCAAGTTGGTACTGTTATTTATGATCCCAAAACTGGTATGATAAAGGAGGATGGAACTGAAAACAATCAAAACTTCTTACCATGCAATTACAATGGAAATATACAGACAATGCAGCCTCATACTATTGCTTTGCAGACTCTTCATTCTCAGAACTCACAGTATGAAGCAGCTTTCCCAGCTTTATCAGATTCACCACCTGGGTTTCAACTTAATGAATTTTACGACACAAATATGCTACAAGCTCAAATGTTCAACTACATGCACGGAAGGAAGTAG 1017 0.3874 MGRGRIPMELIQNEKARKTTFQRRKNSLMKKAYEFSTLCGVDVCLIIYAPNFDGQGLAEPETWPKDTKEVHRIIQKYHDTTSDRGHKIYGVEEYYEDRMKKVEFEISKIQKDKFKIMFPTWDDSFNTLGEEQLRMFVSMLDAKLDACCQRINMLKGDLKGKAIAESDKVQTLTPYLASNPSSYLNLMQYISQVQLFPPPMNMKSISDNNRLAFCPFQLGQSSQPSMLHFGQNDMQLMGKNESVDRANQVGTVIYDPKTGMIKEDGTENNQNFLPCNYNGNIQTMQPHTIALQTLHSQNSQYEAAFPALSDSPPGFQLNEFYDTNMLQAQMFNYMHGRK* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02079 338 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops11g02079 338 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops11g02079 338 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops11g02079 338 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops11g02079 338 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Rops11g02079 338 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Rops11g02079 338 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Rops11g02079 338 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Rops11g02079 338 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Rops11g02079 338 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02079 Rops-Chr11 33932039 33933055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02079 1 216 Type I MADS-box Gene Family AT5G55690 37.445 3.52e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops11g02079 SRF-TF 4.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02079 - - ccaj:109800518 410.994