Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02054 ATGGCTTCGGAAATTTCATTTGAGGATCTCAAAAAGGAGAATGTTGATCTTGAAAACATTCCAGTGGAGGAGGTCTTTCAGCAGCTAAAATGTACCAGAGAGGGTCTGACATCAGCTGAAGGAGAGAAGAGGCTCCAGATTTTTGGCCCCAACAAGCTAGAGGAGAAAACAGAGAACAAGTTCCTCAAGTTCTTGGGTTTTATGTGGAATCCACTATCATGGGTTATGGAGGCAGCTGCTATCATGGCCATTGTATTGGCCAATGGAGGGGGCAAGCCTCCGGATTGGCAAGATTTCACTGGTATTATGGTGTTGCTTATCATCAACTCAACCATCAGTTTCATTGAGGAAAATAATGCAGGCAATGCTGCAGCTGCTTTGATGGCTGGTCTTGCACCCAAAACCAAGGTGTTGAGGGATGGAAAATGGGGTGAGGAAGAGGCAGCAATTTTGGTACCAGGAGATGTGATCAGCATCAAGTTGGGAGACATTGTCCCAGCTGATGCCCGTCTCTTGGAAGGAGATCCACTCAAGATTGACCAATCTGCCCTCACTGGTGAGTCCTTGCCAGTCACAAGGCACCCTGGTCAGGAGGTCTTCTCTGGTTCCACCTGCAAACAAGGTGAGATTGAGGCTGTTGTCATTGCCACTGGTGTCCACACATTCTTTGGTAAGGCTGCACACCTTGTAGACAGCACCAACAATGTTGGTCACTTCCAACAGGTGTTGACATCCATTGGTAACTTCTGTATCTGCTCAATTGCTGTGGGTATGTTGGTTGAGATCATTGTCATGTACCCCATCCAGCAAAGGGCTTACAGAGATGGTATTGACAATTTGTTGGTCCTTCTCATTGGAGGTATCCCAATTGCCATGCCAACTGTCTTGTCTGTGACCATGGCTATTGGATCTCACCGGCTGTCTGAGCAAGGAGCCATCACCAAGAGGATGACTGCCATTGAAGAAATGGCTGGGATGGATGTTCTCTGTAGTGACAAGACTGGAACTCTCACACTTAATAAGCTTACTGTGGACAAGAACTTGATTGAGGTGTTCCCCTCTGGTATGGACAAGGACTCCCTTGTCTTATATGCTGCCAGGGCTTCTAGGACTGAAAACCAGGATGCCATTGATGCATCAATTGTCGGAATGTTGGGTGACCCCAAAGAGGCCAGAGCAGGAATCACTGAGGTGCATTTCTTGCCCTTCAATCCTGTGGATAAGCGCACTGCTATCACCTACATTGATGGCAATGGTGACTGGTACAGAAGCAGCAAAGGTGCCCCTGAGCAAATTATTGATCTTTGTGGCCTTACGGGGGAGACTTTGAAAAAGGCCCACAAAATCATTGATGAGTTTGCTGACCGTGGTCTGCGTTCCTTGGGTGTTGCTCGCCAGACTGTTTCAGAAAAGAACAAGGAGAGTGCAGGAGATCCATGGGAATTCTTGGGTCTCTTACCCCTATTTGACCCTCCAAGGCATGACAGTGCTGAGACTATTCGCCGTGCTCTTGAGCTTGGTGTCAATGTTAAGATGATCACTGGTGACCAACTTGCCATTGGTAAAGAAACCGGTCGCAGGCTTGGAATGGGCACCAACATGTATCCTTCATCCTCCCTTCTTGGTGAATGCAAGGATGCCGCCATGGCATCAATCCCAATTGATGAACTCATTGAGAAAGCTGATGGATTTGCTGGAGTCTTCCCTGAGCACAAGTATGAGATCGTGAAGAGGTTGCAAGACAGAAAACACATTTGTGGAATGACTGGAGATGGTGTGAACGATGCACCAGCACTTAAGAAGGCAGACATTGGCATTGCAGTGGATGATGCAAACCGATGCTGCAAGGAGTGCCTCTGA 1860 0.478 MASEISFEDLKKENVDLENIPVEEVFQQLKCTREGLTSAEGEKRLQIFGPNKLEEKTENKFLKFLGFMWNPLSWVMEAAAIMAIVLANGGGKPPDWQDFTGIMVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWGEEEAAILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQQVLTSIGNFCICSIAVGMLVEIIVMYPIQQRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFPSGMDKDSLVLYAARASRTENQDAIDASIVGMLGDPKEARAGITEVHFLPFNPVDKRTAITYIDGNGDWYRSSKGAPEQIIDLCGLTGETLKKAHKIIDEFADRGLRSLGVARQTVSEKNKESAGDPWEFLGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGECKDAAMASIPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVDDANRCCKECL* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02054 619 FunFam ATPase 2, plasma membrane-type 483 618 - -
Rops11g02054 619 SFLD p-type atpase 312 610 IPR044492 -
Rops11g02054 619 SUPERFAMILY HAD-like 326 613 IPR036412 -
Rops11g02054 619 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Rops11g02054 619 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Rops11g02054 619 SFLD C1.7: P-type atpase like 312 610 - -
Rops11g02054 619 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Rops11g02054 619 Gene3D - 486 618 IPR023214 -
Rops11g02054 619 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Rops11g02054 619 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Rops11g02054 619 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 324 IPR023298 -
Rops11g02054 619 Gene3D - 67 137 - -
Rops11g02054 619 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Rops11g02054 619 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Rops11g02054 619 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Rops11g02054 619 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Rops11g02054 619 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Rops11g02054 619 NCBIfam HAD-IC family P-type ATPase 102 349 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops11g02054 619 NCBIfam plasma-membrane proton-efflux P-type ATPase 35 612 IPR006534 GO:0008553|GO:0016020|GO:0120029
Rops11g02054 619 Gene3D - 216 343 - -
Rops11g02054 619 Gene3D - 138 215 - -
Rops11g02054 619 Gene3D - 344 485 IPR023299 GO:0000166
Rops11g02054 619 FunFam Plasma membrane ATPase 342 489 - -
Rops11g02054 619 PANTHER CALCIUM-TRANSPORTING ATPASE 18 617 - -
Rops11g02054 619 FunFam Plasma membrane ATPase 133 217 - -
Rops11g02054 619 Pfam E1-E2 ATPase 132 309 - -
Rops11g02054 619 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops11g02054 619 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops11g02054 619 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02054 Rops-Chr11 33491106 33495663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02054 1 618 Primary Pumps ATPases AT3G42640 87.055 0.0 1090
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02054 K01535 - gmx:100798717 1115.14