Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02037 ATGGCTTTTCACGATCATCTACCACACGAGATCACTTTTCAACCTTTCACGGAGGAGCAACAGTTAGGTCAAACCAGAGACATGCAGAGGTTACTTCCACTCTCCGGCGGTGGAGGATCAGCTCCGACGTGGCTCAACAACGCCGCCACCCTTCGGCAACAAAATTTTCTCCACTTGCAACCGGATCATCACTCAACAGCACAAAACGACGACGTTCGGGGTATGTTAGGGTCGTCGGAGAAAAAAACGGATCGGAACCGGACTGAAAGTAACATCGAATCGGAGGATTTGGCAGAATACAAAGCAGACATTTTAGGACACCCTCTTTACGACCAGCTTCTTTCTGCTCATGTTTCTTGTTTGAGGATCGCCACACCCGTTGACCAGCTTCCTCGGATCGATGCACAGCTTCAACAGTCGCAGCGCGTGGTTGACAAATACTCTGGCCTTGGAAATGGTGTGATGGATGAGAAGGAGCTTGATCAATTCATGACGCATTATGTTCTATTGCTCTGTGCTTTCAAAGAGCAATTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTTGAGCAGTCTCTACAAAGCTTGACCGGTGTTTCTCCTGGTGAAGGAACGGGTGCAACAATGTCCGATGATGAAGAAGACCAAGCAGAGAGCAATGCCAACTTATACGAAGGAAGCCTTGATGGTGCTGATAGTCTCAGCTTTGGCCCTCTTGTTCCCACTGAAAGTGAGAGATCTTTGATGGAGCGTGTGAGGCAAGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGGATAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGAAGAGCGGGGAAGCTCCCTGGTGACACTACCTCCCTTTTAAAAGCTTGGTGGCAGACCCATTCTAAATGGCCCTATCCAACAGAAGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGAAAAAGGAATTGGCATACAAATAATCCTTCATCTTCTAGTGGCTCCAAAAGCAAGCGCAAGAGTAGTGGTGCAGGTGAAACAAGTAACCAAAGCTTCATGTGA 1119 0.4674 MAFHDHLPHEITFQPFTEEQQLGQTRDMQRLLPLSGGGGSAPTWLNNAATLRQQNFLHLQPDHHSTAQNDDVRGMLGSSEKKTDRNRTESNIESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGVMDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEEDQAESNANLYEGSLDGADSLSFGPLVPTESERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQTHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSGSKSKRKSSGAGETSNQSFM* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02037 372 SMART ELK_2 262 283 IPR005539 GO:0003677
Rops11g02037 372 SUPERFAMILY Homeodomain-like 284 349 IPR009057 -
Rops11g02037 372 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 106 360 - -
Rops11g02037 372 Pfam KNOX2 domain 155 204 IPR005541 GO:0003677|GO:0005634
Rops11g02037 372 ProSiteProfiles 'Homeobox' domain profile. 282 345 IPR001356 GO:0003677
Rops11g02037 372 MobiDBLite consensus disorder prediction 339 372 - -
Rops11g02037 372 MobiDBLite consensus disorder prediction 64 94 - -
Rops11g02037 372 SMART HOX_1 284 349 IPR001356 GO:0003677
Rops11g02037 372 SMART KNOX2_2 149 205 IPR005541 GO:0003677|GO:0005634
Rops11g02037 372 MobiDBLite consensus disorder prediction 63 94 - -
Rops11g02037 372 Pfam KNOX1 domain 100 141 IPR005540 GO:0003677|GO:0005634
Rops11g02037 372 MobiDBLite consensus disorder prediction 204 225 - -
Rops11g02037 372 SMART KNOX1_2 98 142 IPR005540 GO:0003677|GO:0005634
Rops11g02037 372 Pfam Homeobox KN domain 302 341 IPR008422 GO:0003677|GO:0006355
Rops11g02037 372 ProSiteProfiles ELK domain profile. 262 282 IPR005539 GO:0003677
Rops11g02037 372 CDD homeodomain 285 346 IPR001356 GO:0003677
Rops11g02037 372 Gene3D - 288 364 - -
Rops11g02037 372 FunFam homeobox protein knotted-1-like 3 isoform X1 283 344 - -
Rops11g02037 372 Pfam ELK domain 262 283 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02037 Rops-Chr11 33269511 33274847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02037 98 367 Homeobox Transcription Factor Family AT5G11060 82.482 2.32e-162 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops11g02037 KNOX2 4.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02037 - - gmx:100816347 660.218