Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02030 ATGTGTGTGCAGGACGCAGAACAAGTTGCTCAAGATATGGATAACCTGGACAACAACAGAAGGAAGTCATGGCCTTTGTATGGTGAATTCTTGATTACCCAGATGGAGAATTGGGAAAAAGAACCACCTTCTTTGAGAACTTCAAGTGATAGGATCAGTGTTCTAAGTTCTTTTCCTCTGGAAAGCATATGCGAGGATGCAGTGATTGCTGACAAGAAACAGAACCTGATGAATTTTGTCCCTGCTCTTCGGTCTGGAGTGTGGTCTGACATTGGAGAACGCCCTTACATGGAGGATACTCACATATGCATTGAAGATTTGGCAAAGAAATTTAATTATAACATACTATCTGAGGAAGCTGTTTCCTTTTATGGTATATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTCCGTGATCATCTACCAAGAGTAATTGTTGAGGATGTTAACTTTCCTTTGGAGCTTGAGAAGGCGGTCAAAAGGTCATTTTTGGAGACTGATGCTGCATTTTTAAAAACATCCTCTCATGAGTCTTCCCTTTCTACCGGCACAACTGCACTAACTGCAATTATATTTGGAAGGTCTTTACTTGTAGCCAATGCTGGAGACTGCAGGGCTGTCTTGTCCCGTCAAGGAAGGGCTATAGAAATGTCCAAAGATCATAGGCCAAACTGCATCAAAGAAAGGATGCGGATCGAGTCCCTAGGTGGATTCATTGATGATGGTTACCTGAATGGCCAGTTAGGTGTCACTCGTGCTCTTGGTGACTGGCACCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGTGGACCATTGAGTGCTGAACCTGAACTTAAATTGATGACATTGACCAAAGATGATGAGTTCTTGATAATTGCTAGTGATGGAATCTGGGATGTATTTAGTAGCCAAAATGCTGTAGATTTTGCTAGAAGGAGGCTTCAAGAGCATAATGATGAGAAACTATGCTGCAAGGAAATAGTACAGGAAGCAATCAAGAGAGGATCAACAGACAACTTGACAGTTGTGATGGTGTGTTTTAACTCAGAACCACCACCACCTGCGGTTGTAGAAAGAACAAGAGTAAGGAGAAGCATATCTGCAGAGGGACTTCAAAATCTTAAATGCTTGCTACAAGGATAA 1149 0.4212 MCVQDAEQVAQDMDNLDNNRRKSWPLYGEFLITQMENWEKEPPSLRTSSDRISVLSSFPLESICEDAVIADKKQNLMNFVPALRSGVWSDIGERPYMEDTHICIEDLAKKFNYNILSEEAVSFYGIFDGHGGKSAAQFVRDHLPRVIVEDVNFPLELEKAVKRSFLETDAAFLKTSSHESSLSTGTTALTAIIFGRSLLVANAGDCRAVLSRQGRAIEMSKDHRPNCIKERMRIESLGGFIDDGYLNGQLGVTRALGDWHLEGMKEMSERGGPLSAEPELKLMTLTKDDEFLIIASDGIWDVFSSQNAVDFARRRLQEHNDEKLCCKEIVQEAIKRGSTDNLTVVMVCFNSEPPPPAVVERTRVRRSISAEGLQNLKCLLQG* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02030 382 CDD PP2Cc 84 349 IPR001932 -
Rops11g02030 382 PANTHER PROTEIN PHOSPHATASE 2C 68 347 IPR015655 GO:0004722|GO:0006470
Rops11g02030 382 Pfam Protein phosphatase 2C 96 341 IPR001932 -
Rops11g02030 382 Gene3D - 67 353 IPR036457 -
Rops11g02030 382 FunFam Probable protein phosphatase 2C 22 68 352 - -
Rops11g02030 382 SUPERFAMILY PP2C-like 76 351 IPR036457 -
Rops11g02030 382 SMART PP2C_4 74 347 IPR001932 -
Rops11g02030 382 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Rops11g02030 382 ProSiteProfiles PPM-type phosphatase domain profile. 84 349 IPR001932 -
Rops11g02030 382 SMART PP2C_SIG_2 99 349 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02030 Rops-Chr11 33129699 33133197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02030 73 382 PP2C-type Phosphatase Gene Family AT2G25620 60.191 1.24e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Rops11g02030 PP2C 1.8e-71 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02030 K14803 - gmx:100813157 626.32