Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02005 ATGAAGCAGTCTTTTGATCCTTCATCTTTGGGTCCGTCCAAGATTCCATCCATAAATATACCTGGAAAATCAGGGTATGGTGCATGGGGGGTTTTATCTGGATCTGATTCATACCATGCCTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTTCTTCCGCATGAAAAATTGAACTTAACTGACGCTGAAAATGGTTATCAATCTGTTGATGACATCTCTACTGGCTTTAAAAAGCTCAATCAAGATGTAGAGGTCAATGATTCCCTTGAAGAGGGTGATAATCATGCAGTTGGAACCATGCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGCATAATGGATGATTTTGACCTGAGTGGTTTGCCCGGTTCCCTTGAGGACTTGGAAGAGTATGATCTTTTTGGTAGTGGTGGAGGTTTGGAACTTGAAACTGATCCACAGGAAAGTCTCAGTGTGGGTATATCTAAGTTAAGCTTCTCTGATGGTTCTGTCGGAAATGGTTTGCCCCATTTTTCTTTTCCTAATGGTGTGGGAAGTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGATTCAGAGCTAAGAGCTCTTTTTGAGCAATATGGTGATGTTAGAACTCTATATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTATTATGACATACGTGCTGCTCGAACTGCCATGCGTGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTTGACATTCACTTTTCAATACCAAAGGATAATCCATCTGACAAGGATATCAACCAAGGAACCTTGGTAATTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTCCGCCAAATATTCGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCCCACAAGAGGCATCATAAGTTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATCATTAAATAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTCGTCGAAATTTGATGCTCCAACTAAATCAAGAGCTTGACCAAGATGAATCTCGGAGTTTCCGATATCAAGTGGGTTCACCTGTAGCCAACTCTCCACCAGGTAATTGGTTACAGTTCAACAGCCCTGTTGAGCAGAATTCAATGCAAACTATGAATCATTCTCCTGGTTCTAGGATCTTGAGCCCAACAACAGGCAATCATTTACCAGGATTAGCTTCAATTTTGCAACCACAGGGATCAAACACTGTGAAAGCTGCAACTATTGGCAAGGACTTAGGAAGGAGTAGTCATGGAGAGCACATATTTACCAGTATGAATTCATCACATGGAGCTACTTTTCAGTCGCATTCACTTCCAGAGCCAAAATTCAGCCAATATCGTGGATCTTTGTCTTCTTTTGGTCCATCAACATCAAATGGATCTTCAATGGAAACCCTGTCTGGGCCACAGTTTCTATGGGGAAGTCCAAAGCTCTACTCAGAGCATTCCAAACCTTCAGCTTGGCCAAAACCATCTGTGGGGCATCCGTTTACATTGAATGGAAAGAGCCATGCCTTCCCATACTCAAGTCAGAATAGTTCCTTTGTCAGTTCATCCCAGCTTCATCACCATCATCATGTCGGCTCTGCTCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTTCTTCCTCCTGAGTCACCTGAAACATCATTCATGAATAATGTTGGTTATGGAGGCATGGGTCTGGGGCACAATGATGGAAATTACATGGTTAATGTGGGTGGGTCTGTTAATGCTGGCATTTCTATACCAAGAAATATTTCTGATAATGGTTCATCAAACATCAGAATGAGATCTTCTCCTATGCTTAGCCCTGTATTTTTGGGTAATGGTCCTTATCCAGGACTGCTACCTACTGCCATGGAGAGTTTGAATGACCGAGCTCGTAGTAGATGGATAGAGAATAATGGAAGCCAAGTTGACAGCAAGAAGCAATTTCAGCTTGACTTGGATAAGATTAAAAATGGTGAAGATAAAAGGACTACACTAATGATAAAGAATATCCCAAATAAATACACCTCAAAAATGTTATTAGCTGCCATCGATGAAAATCACAGGGGTACCTATGATTTTCTCTATCTGCCAATTGACTTTAAGAATAAATGCAATGTGGGTTATGCATTTATCAACATGCTGTCACCCTCGCTTATTATTCCATTCTACGAGACATTCAATGGGAAGAAATGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGGAAGACTGCTCTTGTGAGCCACTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGCCCTATTGTCTTTCACTCAGAGGGTCCTGAAGCTGGTGATCTGATCATACAAGAGCATATTCCCAACAACTTCAACAATCTAAATATTCATGCACATAGGCCAAGTGAGTTATGTGAAGGATAA 2535 0.4154 MKQSFDPSSLGPSKIPSINIPGKSGYGAWGVLSGSDSYHASSDASLFSSSLPVLPHEKLNLTDAENGYQSVDDISTGFKKLNQDVEVNDSLEEGDNHAVGTMLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGLELETDPQESLSVGISKLSFSDGSVGNGLPHFSFPNGVGSVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDVRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVIFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPVANSPPGNWLQFNSPVEQNSMQTMNHSPGSRILSPTTGNHLPGLASILQPQGSNTVKAATIGKDLGRSSHGEHIFTSMNSSHGATFQSHSLPEPKFSQYRGSLSSFGPSTSNGSSMETLSGPQFLWGSPKLYSEHSKPSAWPKPSVGHPFTLNGKSHAFPYSSQNSSFVSSSQLHHHHHVGSAPSGLPFERHFGFLPPESPETSFMNNVGYGGMGLGHNDGNYMVNVGGSVNAGISIPRNISDNGSSNIRMRSSPMLSPVFLGNGPYPGLLPTAMESLNDRARSRWIENNGSQVDSKKQFQLDLDKIKNGEDKRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKTALVSHFQNSSLMNEDKRCRPIVFHSEGPEAGDLIIQEHIPNNFNNLNIHAHRPSELCEG* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02005 844 SUPERFAMILY RNA-binding domain, RBD 191 354 IPR035979 GO:0003676
Rops11g02005 844 Gene3D - 183 277 IPR012677 -
Rops11g02005 844 MobiDBLite consensus disorder prediction 1 15 - -
Rops11g02005 844 MobiDBLite consensus disorder prediction 1 22 - -
Rops11g02005 844 Pfam RNA recognition motif 2 696 792 IPR007201 -
Rops11g02005 844 FunFam Protein MEI2-like 1 278 373 - -
Rops11g02005 844 Gene3D - 278 377 IPR012677 -
Rops11g02005 844 SUPERFAMILY RNA-binding domain, RBD 698 782 IPR035979 GO:0003676
Rops11g02005 844 CDD RRM2_MEI2_like 278 348 - -
Rops11g02005 844 MobiDBLite consensus disorder prediction 449 502 - -
Rops11g02005 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 267 IPR000504 GO:0003723
Rops11g02005 844 FunFam MEI2-like protein 5 isoform 2 183 277 - -
Rops11g02005 844 CDD RRM1_MEI2_like 193 269 IPR034453 -
Rops11g02005 844 MobiDBLite consensus disorder prediction 454 502 - -
Rops11g02005 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 352 IPR000504 GO:0003723
Rops11g02005 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 346 IPR000504 GO:0003723
Rops11g02005 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 260 IPR000504 GO:0003723
Rops11g02005 844 CDD RRM3_MEI2_like 699 784 IPR034454 -
Rops11g02005 844 PANTHER RNA RECOGNITION MOTIF-CONTAINING 42 811 - -
Rops11g02005 844 SMART rrm1_1 698 774 IPR000504 GO:0003723
Rops11g02005 844 SMART rrm1_1 195 263 IPR000504 GO:0003723
Rops11g02005 844 SMART rrm1_1 280 348 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02005 Rops-Chr11 32546284 32552766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02005 189 387 Eukaryotic Initiation Factors Gene Family AT1G71770 25.112 1.23e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02005 - - gmx:100787152 1491.86