Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02004 ATGAGCTTTGGAAGCAGAGGGAAATTGAAAGACACAAGCTTCACGGCATCAGCTGAAAGCAAAATGGCCATCAACAGGGACAAGGCTGTTGCTAAGTACAGTGCAGATGCTGAGATTCTTGCTGAGTTTGAGCAGTCTGGTGTTTCAGGCAAATTATTTGACTATTCAAGGACGGTTCTTGATCATCCCAGGTTAGTGTCTGAGGAGAAAATAACTGCATATCTGTCCAAAATCCAAAGGGGTGGCCTTATCCAACCCTTTGGTTGCATGCTTGCAATTGAAGAACCTACTTTTAGAATCATTGGGTACAGTGAGAATTGTTTTCAATTGTTGGGTTTGGAGAGGCAAATTGATTCAAAACAGTTTGTGAGTCTGATTGGGGTTGATGCCATAACCCTGTTCACTCCCCCTTCTGGGGCTTCCCTTGCAAAAGCTGTGGCTTCCAGGGAAATTTCACTTTTGAACCCAATTTGGGTCTATGCAAGGACAACCCAGAAGCCATTTTATGCCATACTACATAGGATTGATGTTGGGGTTGTGATAGATTTGGAGCCTGCACGGTCAAGTGATCCTGCATTGTCACTTGCTGGGACAGTTCAGTCACAGAAGCTGGCAGTTAGAGCAATTTCAAGGTTGCAATCTCTTCCTGGGGAAGACATTGGTCTGTTGTGTGACACAGTTGTTGAGGAAGTGCAGAAGCTTACTGGATATGACAGGGTTATGGTTTACAAGTTTCATGAGGATGATCATGGTGAGGTTGTATCTGAGATTAGGAGGTCAGATTTAGATCCTTACTTGGGTTTGCATTATCCTGCCACAGATATCCCTCAAGCTTCTCGCTTCTTGTTCAAGCAAAACCGGGTCAGGATGATTACTGATTGCCATGCAAAGCCAGTTAAGGTCATTCGAAGTGAAGAATTAAAGCAACCTCTTTGCTTGGTCAACTCAACCCTTAGGTCTCCACATGAATGTCACACACAGTATATGGCTAACATGGGCTCAATTGCCTCTCTGGCGATGGCAGTTATAGTCAATGGAAATGATACAACAAGGCTTTGGGGTTTGGTAGTTTGTCATCACACTTCACCGTGCTATGTGCCTTTCCCGGTTCGTTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGACTGCAGCTTTACATGGAGATTCAATTGGCATCACAAATGGCAGAGAAGATAATTCTTAAAACACAAACCTTACTGTGTGACATGCTCCTTCGTGATGCACCATTTGGCATTGTGACTCAATCCCCAAGTATCATGGATCTTGTGAAGTGTGATGGGGCTGCCTTGTACTATGATGGAAACTGTTGGTTGTTAGGCACAACCCCAACTGAATCCCAGGTGAAAGACATTGCAGAATGGCTACTTAGTAATCATGGGGACTCAACAGGTTTGACCACAGATAGTTTGGCTGATGCTGGTTATCCTGGTGCTGCTTTGCTGGGAGATGCTGTTTGTGGCATGGCCACAGCAAGAATCAATTCAAGACATTTCCTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTCAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAAGGATGATGGAGGAAAAATAAACCCAAGATCATCATTTAAAGCTTTTCTAGAAGTAGTCAAAAGCAAAAGTTCGCCTTGGGAAGTATCAGAAATCAATGCTATTCACTCATTACAGCTGATCATGAGAGATTCATTCCATGACACACAGAACAATGGTCCAAAGACTCTAAATTATGTACAGAAAAGTGACACTGCAATGGGAGGGGTGGATGAACTCAGTTCAGTAGCATTAGAAATGGTGAGGTTAATTGAGACAGCAACAGTCCCAATTTTTGGGGTTGATACAGATGGCCTAATCAATGGATGGAATGTAAAAATTGCTGAATTGACAGGTCTGCAGGCCAGTGAAGCTATGGGAAAATCCCTAGTAAATGAAGTAGTACATGCCGACTCACGTGAAACTCTTACAAATATTCTAAGCAGAGCCTTGCAAGGTCATGAGGACAAAAATGTTGAGTTGAAAATAAAACACTTTGGACTTGGTCAACAAAAGGAAGTTGTATATGTCATGGCCAATGCCTGCACTAGTAGGGACTACACAAATGCTGTTGTTGGGGTATGCTTCGTAGGTCAGGACATTACTAATGAGAAAGTGGTTCTAGATAAATTCATCAAGTTGGAAGGCGATTACAAAGCTATCATACAGAGTCTCAGTCCACTGATTCCACCTATATTTGCTTCTGATGAGAATGCTTGCTGCTCTGAATGGAATGCAGCCATGGAAAAGCTAACTGGTTGGAAGAGAGATGAAGTCATAGGAAAAATGCTTCCTGGGGAAATCTTTGGAAGCTTTTGTCAGTTGAAAGGTCAAGATACACTGACTAATTTTATGATTATACTGTATCGTGGAATAAGTGGTCAGGATTCTGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGTGAATTTATAGAGGCTTATATAACAGCAAACAAGAAGATCGATGGAGGTGGGAATATGATTGGCTGTTTCTGCTTCTTGCAGATTGTACCTCTAGATATGAATCAGCCCTCTCAAGGACACGTGTCTAAAGGCAGGGAAAGGATTTCTGAATCAAAGGAGTTAGCTTATATACTACAAGAGATGAAGAATCCTTTAAATGGTATACGATTCACACACAAACTTTTGGAAAATACAGATGTCTCTGATAACCAGAAACAGTTTCTTGATACTAGTGATGCATGTGAAAGACAGATCAAGGCAATTATTGAAGATTCAAATATAGAAAGTATTGATGAAGGCAATTTGCAGCTAAACATGGAAGAATTTCTTCTGGGAAATATTTTAGATGCCATTGTCAGTCAAGTCATGATGTTGATAAGAGAAAAAAACTTACAGCTGTTTCATGAAATTCCTGATGAAATCAAAACACTTGCTCTTTATGGTGACCAAATAAGGCTTCAGGTGGTCTTGTCTGACTTTTTGCTTAATGTAGTCAGCCATACACCATCTCCAAATGGCTGGGTAGAAATCAAGATTTCACCTGGTTTAAAAGTAATACAAGATGGCAATGAGTTTATCCATCTGAAGTTCAGAATGACCCATTCTGGTCAAGGTCTTCCTGCTACTGTTCTTCATGATATGTTTGAAGGAGAGAATCAATGGACTACACAGGAAGGTTTAGGGCTATATATGTCCAGGAAAATCCTCAGTAGGATGAATGGTCATGTCCAATATGTAAGAGAACAAAATAAGTGCTATTTCCTCATTGATCTTGAACTTAGAACAAGAAAAGAAAGGTAA 3330 0.4126 MSFGSRGKLKDTSFTASAESKMAINRDKAVAKYSADAEILAEFEQSGVSGKLFDYSRTVLDHPRLVSEEKITAYLSKIQRGGLIQPFGCMLAIEEPTFRIIGYSENCFQLLGLERQIDSKQFVSLIGVDAITLFTPPSGASLAKAVASREISLLNPIWVYARTTQKPFYAILHRIDVGVVIDLEPARSSDPALSLAGTVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLDPYLGLHYPATDIPQASRFLFKQNRVRMITDCHAKPVKVIRSEELKQPLCLVNSTLRSPHECHTQYMANMGSIASLAMAVIVNGNDTTRLWGLVVCHHTSPCYVPFPVRYACEFLMQAFGLQLYMEIQLASQMAEKIILKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALYYDGNCWLLGTTPTESQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAALLGDAVCGMATARINSRHFLFWFRSHTAKEVKWGGAKHHPEDKDDGGKINPRSSFKAFLEVVKSKSSPWEVSEINAIHSLQLIMRDSFHDTQNNGPKTLNYVQKSDTAMGGVDELSSVALEMVRLIETATVPIFGVDTDGLINGWNVKIAELTGLQASEAMGKSLVNEVVHADSRETLTNILSRALQGHEDKNVELKIKHFGLGQQKEVVYVMANACTSRDYTNAVVGVCFVGQDITNEKVVLDKFIKLEGDYKAIIQSLSPLIPPIFASDENACCSEWNAAMEKLTGWKRDEVIGKMLPGEIFGSFCQLKGQDTLTNFMIILYRGISGQDSEKLPFGFFDRNGEFIEAYITANKKIDGGGNMIGCFCFLQIVPLDMNQPSQGHVSKGRERISESKELAYILQEMKNPLNGIRFTHKLLENTDVSDNQKQFLDTSDACERQIKAIIEDSNIESIDEGNLQLNMEEFLLGNILDAIVSQVMMLIREKNLQLFHEIPDEIKTLALYGDQIRLQVVLSDFLLNVVSHTPSPNGWVEIKISPGLKVIQDGNEFIHLKFRMTHSGQGLPATVLHDMFEGENQWTTQEGLGLYMSRKILSRMNGHVQYVREQNKCYFLIDLELRTRKER* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02004 1109 Gene3D - 394 567 IPR043150 -
Rops11g02004 1109 SUPERFAMILY GAF domain-like 397 576 - -
Rops11g02004 1109 FunFam Phytochrome 600 732 - -
Rops11g02004 1109 CDD PAS 749 857 IPR000014 -
Rops11g02004 1109 PIRSF Phytochrome_conventional 7 1109 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Rops11g02004 1109 NCBIfam PAS domain S-box protein 611 726 IPR000014 -
Rops11g02004 1109 SMART HKATPase_4 991 1105 IPR003594 -
Rops11g02004 1109 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Rops11g02004 1109 ProSiteProfiles Histidine kinase domain profile. 886 1105 IPR005467 -
Rops11g02004 1109 SUPERFAMILY PYP-like sensor domain (PAS domain) 752 854 IPR035965 -
Rops11g02004 1109 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 947 1098 IPR036890 -
Rops11g02004 1109 Pfam PAS fold 607 722 IPR013767 GO:0006355
Rops11g02004 1109 Pfam PAS fold 738 857 IPR013767 GO:0006355
Rops11g02004 1109 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 379 IPR016132 -
Rops11g02004 1109 SMART pas_2 737 806 IPR000014 -
Rops11g02004 1109 SMART pas_2 606 673 IPR000014 -
Rops11g02004 1109 FunFam Phytochrome 394 524 - -
Rops11g02004 1109 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 991 1101 IPR003594 -
Rops11g02004 1109 Pfam GAF domain 219 389 IPR003018 GO:0005515
Rops11g02004 1109 SUPERFAMILY GAF domain-like 199 385 - -
Rops11g02004 1109 FunFam Phytochrome 942 1109 - -
Rops11g02004 1109 Gene3D - 920 1097 IPR036890 -
Rops11g02004 1109 Gene3D - 200 550 IPR029016 -
Rops11g02004 1109 ProSiteProfiles PAS repeat profile. 738 790 IPR000014 -
Rops11g02004 1109 SUPERFAMILY PYP-like sensor domain (PAS domain) 610 718 IPR035965 -
Rops11g02004 1109 ProSiteProfiles PAS repeat profile. 604 675 IPR000014 -
Rops11g02004 1109 CDD HATPase_Phy-like 990 1103 IPR044767 -
Rops11g02004 1109 CDD PAS 615 722 IPR000014 -
Rops11g02004 1109 Gene3D PAS domain 605 726 - -
Rops11g02004 1109 Pfam Phytochrome region 402 576 IPR013515 GO:0006355|GO:0009584
Rops11g02004 1109 CDD HisKA 879 934 IPR003661 GO:0000155|GO:0007165
Rops11g02004 1109 FunFam Phytochrome 751 859 - -
Rops11g02004 1109 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Rops11g02004 1109 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Rops11g02004 1109 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Rops11g02004 1109 PRINTS Phytochrome signature 607 623 IPR001294 GO:0006355|GO:0009584
Rops11g02004 1109 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355|GO:0009584
Rops11g02004 1109 PRINTS Phytochrome signature 626 641 IPR001294 GO:0006355|GO:0009584
Rops11g02004 1109 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355|GO:0009584
Rops11g02004 1109 PRINTS Phytochrome signature 720 740 IPR001294 GO:0006355|GO:0009584
Rops11g02004 1109 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355|GO:0009584
Rops11g02004 1109 PRINTS Phytochrome signature 700 717 IPR001294 GO:0006355|GO:0009584
Rops11g02004 1109 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 188 IPR035965 -
Rops11g02004 1109 Gene3D PAS domain 77 322 - -
Rops11g02004 1109 Gene3D PAS domain 751 860 - -
Rops11g02004 1109 SMART gaf_1 219 399 IPR003018 GO:0005515
Rops11g02004 1109 Pfam PAS fold 73 186 IPR013654 GO:0006355
Rops11g02004 1109 SMART HisKA_10 879 943 IPR003661 GO:0000155|GO:0007165
Rops11g02004 1109 PANTHER OS08G0260000 PROTEIN 70 940 - -
Rops11g02004 1109 Pfam His Kinase A (phospho-acceptor) domain 881 942 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02004 Rops-Chr11 32534656 32540487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02004 15 1105 Histidine Kinase Gene Family AT4G18130 63.373 0.0 1469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02004 K12123 - gmx:100808192 1969.13