Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01979 ATGGGTTCTTGGGCTACACCATCTGTTCTCACCAATCATTTTATTCCATTTTCTGCCACTATTACTGACTCTTCCATGAAGTCCAAATTGGGTCCCAGTTTCCTTAAAATATACACAAGTACAAACAAAGGAAAATTCAGTCTCTCTTTTGCTAGGGACAATTATGAAGTTAGGAATAATGGTGCAATCAAATATATGCAAATCCAACAAGAACAAGGAACTTGGGAAGAACCAGATATTGGCAGTGATAGTGACAGTGAGTATAGTGATGAAGAAGATGAGGAAGTTCAAGATGAGAACCTTGAATTTGAAAGTGATAGGGAAGAGGACGAGGCTGAGACTTCAGCTATTGGCAATGCTAATATAACTTCAAGGCATGAGTATGAGGAGCATATTAAGAAAGAGGTTGAACAGCTTTTGGAACCTGAAGAAAGAGCAATACTGCAACAGAATGTTACTCCTAACTTGGAAAAAATATCATCGGAAAAATGGAGCCCACTGCACACTCTTGCACTATCAATGCAGATAAGTTGCATGGATAAGCTTCTTGAAAATGGTGTGGATATTGATTTCCTTGATAAGGAAGGTCTCACTGCACTTCATAAGGCAATTATAGGTAAAAAGGAAGCTGTAATAAGCCATCTTTTACGAAAAGGTGCAAGTCCTCATGTTAAGGATAAGGATGGAGCTACTCCACTTCATTATGCAGTTCAAGTTGGTGCCAAGCAAACTCTGAAATTATTGATAAAGTACAAGGTTGATGTCAATGCTGCAGATAATGAAGGTTGGACCCCATTGCATGTTGCCATTCAAAGCAGAAATAGAGATATAGCAAAAATTTTGTTAGTCAATGGTGCAGATAAGACGAGAAAAACTAAGGATGGGAAAACAGCACTGGATCTAAGCTTATGTTATGGGAAAGACTTCAAGTCTTATGACCTTGCTAGAGTAGTGAAGGTAATTCCAGTTAACAGAGATCTATAA 984 0.3821 MGSWATPSVLTNHFIPFSATITDSSMKSKLGPSFLKIYTSTNKGKFSLSFARDNYEVRNNGAIKYMQIQQEQGTWEEPDIGSDSDSEYSDEEDEEVQDENLEFESDREEDEAETSAIGNANITSRHEYEEHIKKEVEQLLEPEERAILQQNVTPNLEKISSEKWSPLHTLALSMQISCMDKLLENGVDIDFLDKEGLTALHKAIIGKKEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKQTLKLLIKYKVDVNAADNEGWTPLHVAIQSRNRDIAKILLVNGADKTRKTKDGKTALDLSLCYGKDFKSYDLARVVKVIPVNRDL* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01979 327 ProSiteProfiles Ankyrin repeat profile. 195 227 IPR002110 GO:0005515
Rops11g01979 327 ProSiteProfiles Ankyrin repeat region circular profile. 261 287 - -
Rops11g01979 327 MobiDBLite consensus disorder prediction 70 126 - -
Rops11g01979 327 ProSiteProfiles Ankyrin repeat region circular profile. 195 227 - -
Rops11g01979 327 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 114 317 - -
Rops11g01979 327 SMART ANK_2a 228 257 IPR002110 GO:0005515
Rops11g01979 327 SMART ANK_2a 261 290 IPR002110 GO:0005515
Rops11g01979 327 SMART ANK_2a 162 191 IPR002110 GO:0005515
Rops11g01979 327 SMART ANK_2a 195 224 IPR002110 GO:0005515
Rops11g01979 327 ProSiteProfiles Ankyrin repeat region circular profile. 228 260 - -
Rops11g01979 327 Pfam Ankyrin repeats (3 copies) 210 291 IPR002110 GO:0005515
Rops11g01979 327 Gene3D - 124 228 IPR036770 -
Rops11g01979 327 PRINTS Ankyrin repeat signature 229 244 IPR002110 GO:0005515
Rops11g01979 327 PRINTS Ankyrin repeat signature 277 291 IPR002110 GO:0005515
Rops11g01979 327 ProSiteProfiles Ankyrin repeat profile. 261 293 IPR002110 GO:0005515
Rops11g01979 327 SUPERFAMILY Ankyrin repeat 154 306 IPR036770 -
Rops11g01979 327 MobiDBLite consensus disorder prediction 78 111 - -
Rops11g01979 327 ProSiteProfiles Ankyrin repeat profile. 228 260 IPR002110 GO:0005515
Rops11g01979 327 ProSiteProfiles Ankyrin repeat profile. 162 194 IPR002110 GO:0005515
Rops11g01979 327 Gene3D - 229 308 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01979 Rops-Chr11 31999204 32002855 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01979 147 287 Ion Channels AT2G25600 32.624 5.55e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01979 - - lja:Lj0g3v0067589.2 485.337