Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01965 ATGCGGAGCCACCTTGTGTGTTGTGGGTGTAGGAACATCTTGCTTTACCCCAGAGGAGCAAGCAATGTTTGCTGTGCATTGTGCAATGCCATTACCCCTGTTCCTCCTCCTGGAATGGAAATGTCACAACTTTATTGTGGAGGCTGTAGGACATTGCTAATGTACACACGTGGAGCTACAAGGGTGAGATGTTCCTGCTGTAATACAACAAACCTTGTACCAGAATCTAATCAAGTCAGCCATATCCATTGTGGGAACTGCCGGACAATACTCATGTATCCTTATGGAGCTCCCTCAGTCAAATGTTCAATATGTCACTATATTACTAACGTCAGTATGACCAATGGAAGGCTTCCAATTCCCGTGCAGAGTCCAAATGGAACAACCAGCTCTGAATCTGAAACAATATCTTCTACTTCATCATCAAAGCCCCACTTTGAGAGCCAAACTGTTGTCGTAGAAAATCCCATGACTGTTAATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTGGGCGTTATAACAGATAAGAAATGA 537 0.4358 MRSHLVCCGCRNILLYPRGASNVCCALCNAITPVPPPGMEMSQLYCGGCRTLLMYTRGATRVRCSCCNTTNLVPESNQVSHIHCGNCRTILMYPYGAPSVKCSICHYITNVSMTNGRLPIPVQSPNGTTSSESETISSTSSSKPHFESQTVVVENPMTVNSSGKLVSNVVVGVITDKK* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01965 178 Pfam LSD1 zinc finger 46 69 IPR005735 -
Rops11g01965 178 Pfam LSD1 zinc finger 7 31 IPR005735 -
Rops11g01965 178 Pfam LSD1 zinc finger 84 108 IPR005735 -
Rops11g01965 178 PANTHER PROTEIN LSD1 3 177 IPR040319 -
Rops11g01965 178 MobiDBLite consensus disorder prediction 121 147 - -
Rops11g01965 178 NCBIfam zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Rops11g01965 178 NCBIfam zinc finger domain, LSD1 subclass 4 33 IPR005735 -
Rops11g01965 178 NCBIfam zinc finger domain, LSD1 subclass 81 110 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01965 Rops-Chr11 31697748 31704784 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Rops11g01965 zf-LSD1 3.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01965 - - gmx:100776394 289.271