Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01963 ATGGAACAGTTGAAATTGGCTGCACATTCTGGTGCCAAAGAGGATTATCCTTTTAGGCAAAAGCCAAAAAATAACAATGCACTTGAGTCTTCTGACAGTCTGAGAAATAGAAAGATATCAGCTAGATGGGATCCAGCTGAAGCAAGTCGGCCTATGATTGATGAAGCACCTGTGTTTTATCCAACAGTTGAAGAGTTTGAAGACACACTCGGTTACATAGCAAAGATACGCCCCCAAGCTGAACCTTATGGCATATGCAGAATTGTCCCTCCTGCTTGCTGGGTTCCACCTTGCCCTCTTAAGGAAAAGGCTGTTTGGGAAAATGCTGAATTTCCTACCCGTATTCAGCAAATTGATTTACTTCAAAATAGGGAACCGATGAGGAAAAAAAGTAGGGGAAGGAAACGAAAACGTAGAAAGAACTCCAAAACAGGGACATGTAGGAGAAATGCCAATTCAGCTTCTGAAGCTAATAATGCTTCTGAATCTGATGAGAAATTTGGATTCCAATCAGGGTCAGACTTCACGCTTAAAGATTTTCAGCAATATGCTAATTTTTTTAAGGAATGCTACTTTGGATTGAAAGATGCCAATGAATATGGAAAAATTAGTGATGGTAACAACCATAAGAGATGGGAGCCCTCTGAGGAGGAAATTGAAGGGGAATACTGGCGAATAATTGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAGACTGGAGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCTTAACTAAGAGTGATTTGGATCGGTATGCCTTGTCTGGCTGGAATCTAAATAACTTCCCACGACTGCCAGGTTCTGTGCTAAGTTTTGAAGGAAGTGACATCTCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGCTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTCTATTCGCTTAATTATCTGCACTGGGGTGACCAAAAAGTATGGTACGGAGTACCTGGAAACCACGCTTCTGCTTTTGAAGATGCAATGAGGAAGCACTTGCCTGATTTATTTGAGGAACAACCAAATCTACTCAATGAACTGGTTACTCAGTTATCTCCTTCAATTCTTAAATCTGAGGGAGTGCCTGTGTATCGCACTGTTCAGCATTCTGGGGAATTTGTTATTACCTTTCCGAGGGCATACCATTCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTGAATGTGGCTCCTGTTGATTGGTTAATGCATGGCCAGAATGCTGTTGAGCTTTACAGTTTACAATGCCGTAAGACATCATTATCACATGATAAGCTGTTATTTGGATCAGCACTGGAAGCTGTACGAGCCCTTGCAGAGCTAGCTCTTCATGGAAAGGAAACTCCAAAAAATTTGAAATGGAGTAGTGTCTGCGGGAAAAATGGAGTTCTTACTAAGGCATTTAATACAAGGATAAAGATGGAAGAAGAGAGGCTAGACTGCCTTCCAACTCATTATAAGTTGCTGAAGATGGACAATGACTTTGATCTGCACACGGAAAGAGAATGTTTCTCTTGCTTTTATGACTTGCACCTATCTGCTGTAGGTTGTGAGTGCTCTCCTGACAGATATCATTGCCTTAAGCATGCTAATTTGTTCTGCTCATGCAAAATGGACAAAGGATTTGTTCTGCTTCGATATACTGTAAATGAGCTAAAGAAATTGCTTGAAGCATTAGAAGGCGAATCACTTGCTATAGAAGCGTGGGCAAAGACAAATCTTGGAATGGTTTCTGCTGATGCCAATGAGGTTTGCATAGACAAACCAGGTGATGAGAGAGACATGTACAAGACCAAGGATTTTGAAGAGGGGGAAAGCTCAACTGGTCAAAGGATTTTGACCAAGGATAGGTCAAATTTAAATGCATCTAGCAGTCCTTATTGTCATGTTACTTCAGAGACAATGCAGTCTGAATCTCACCCTGTAACTTTTAGTGCATCATATGGCAGTATAGATAGTGGTAATAATAATATTAATGATAATAAGATGGTCATAGACAAAGAAGATAAGGTGGACAAGGCAGGTTCTCTGGATTTAAATCTTGGTGTAATATCAGGTGAAAATGAAAATTATTTGCTGCATATTGCTGATAACCATCATAATAAGGGTGTTTCAGTAGAGGAAAAATTATGCTGCATAGAGGCCAAAAAGGAGCAAGACGACAACATGGAACTCGGTGAGGGTTACCTATCACACTCATCTTCTGTTCTGAAGACAGATTTTTCATCATGTTCAGGGGATGTACTTAATTCTTGTACATTTGATGGTGGAAAATATGAGGTGGATGTGCAAATGGATTCAGATTCAAGAAAGCAACCCAACAGTGTATTTAAAAAGGAAGTCATAGACACCACAAATACAAGTATATCTTTGACATGTGAAAGCTGCCTAATGCAAATGTTTGGCAGTTCTGTCCAGCCTATAAGTTTGGGATCTGTTGTTAATGGAAAGCTGTGGTGCAGTAATCAAACAATATATCCAAAAGGATTCAAGAGTCGAGTTAATTTCTTTAGTATTCTTGATCCAACAAGAGTTTGTAGCTATATTTCTGAAGTCATTGATGCTGGATTTCTTGGACCTCTTTTCAAGGTTACCGTGGAAGGATGTCCAAATGAGGCTTTCACAGATACTTCAGCAGATAAGTGCTGGGAATCAGTTCTAAAGAGACTACATGATGAAATCATGAGGCGAAGGAGTCTAGGTGAACTAGAACTTCCTCCCTTAAAGCTTCTGAAAAGCATCAACGGTCTTAGAATGTTTGGCTTCCTTTTACCATTCATTATTCAGGCCATCGAAGCTCTAGATCCCGGTAATCAGTGTGTAGAATACTGGAATCACAAAGTTGACCCTACATCTTCAATCAGTGCCATTGATAACTATAAGGTCACATGTGGTTCAAGTAGCTCTTTAGATGATGTCAATACCAAGGATGACACAGGAGGAAGTTGTCATTCTCTTGAAGAGATGAAATCAATACTACAAAGGGCAAGTCCTGATGAGTTAAGCATAATGCATAAATTACTCAGCTCTGATGCACAGTGCTCACAGTGGAGAATGGCATTGATATCCATGATAGATGAGATCCAGAAAGCTTGTAGATAA 3153 0.4041 MEQLKLAAHSGAKEDYPFRQKPKNNNALESSDSLRNRKISARWDPAEASRPMIDEAPVFYPTVEEFEDTLGYIAKIRPQAEPYGICRIVPPACWVPPCPLKEKAVWENAEFPTRIQQIDLLQNREPMRKKSRGRKRKRRKNSKTGTCRRNANSASEANNASESDEKFGFQSGSDFTLKDFQQYANFFKECYFGLKDANEYGKISDGNNHKRWEPSEEEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKASSLTKSDLDRYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDQKVWYGVPGNHASAFEDAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGQNAVELYSLQCRKTSLSHDKLLFGSALEAVRALAELALHGKETPKNLKWSSVCGKNGVLTKAFNTRIKMEEERLDCLPTHYKLLKMDNDFDLHTERECFSCFYDLHLSAVGCECSPDRYHCLKHANLFCSCKMDKGFVLLRYTVNELKKLLEALEGESLAIEAWAKTNLGMVSADANEVCIDKPGDERDMYKTKDFEEGESSTGQRILTKDRSNLNASSSPYCHVTSETMQSESHPVTFSASYGSIDSGNNNINDNKMVIDKEDKVDKAGSLDLNLGVISGENENYLLHIADNHHNKGVSVEEKLCCIEAKKEQDDNMELGEGYLSHSSSVLKTDFSSCSGDVLNSCTFDGGKYEVDVQMDSDSRKQPNSVFKKEVIDTTNTSISLTCESCLMQMFGSSVQPISLGSVVNGKLWCSNQTIYPKGFKSRVNFFSILDPTRVCSYISEVIDAGFLGPLFKVTVEGCPNEAFTDTSADKCWESVLKRLHDEIMRRRSLGELELPPLKLLKSINGLRMFGFLLPFIIQAIEALDPGNQCVEYWNHKVDPTSSISAIDNYKVTCGSSSSLDDVNTKDDTGGSCHSLEEMKSILQRASPDELSIMHKLLSSDAQCSQWRMALISMIDEIQKACR* 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01963 1050 MobiDBLite consensus disorder prediction 146 165 - -
Rops11g01963 1050 Pfam F/Y rich C-terminus 876 964 IPR003889 GO:0005634
Rops11g01963 1050 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Rops11g01963 1050 PANTHER LYSINE-SPECIFIC DEMETHYLASE 50 805 - -
Rops11g01963 1050 MobiDBLite consensus disorder prediction 1 34 - -
Rops11g01963 1050 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Rops11g01963 1050 Pfam F/Y-rich N-terminus 825 869 IPR003888 GO:0005634
Rops11g01963 1050 Gene3D Cupin 41 414 - -
Rops11g01963 1050 ProSiteProfiles FYR domain FYRC motif profile. 874 964 IPR003889 GO:0005634
Rops11g01963 1050 SMART JmjN_1 55 96 IPR003349 -
Rops11g01963 1050 SMART cupin_9 264 430 IPR003347 -
Rops11g01963 1050 SMART fyrc_3 878 975 IPR003889 GO:0005634
Rops11g01963 1050 ProSiteProfiles FYR domain FYRN motif profile. 814 872 IPR003888 GO:0005634
Rops11g01963 1050 MobiDBLite consensus disorder prediction 118 165 - -
Rops11g01963 1050 FunFam Putative lysine-specific demethylase JMJ16 820 958 - -
Rops11g01963 1050 SMART fyrn_3 828 872 IPR003888 GO:0005634
Rops11g01963 1050 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Rops11g01963 1050 SUPERFAMILY Clavaminate synthase-like 265 450 - -
Rops11g01963 1050 Pfam jmjN domain 57 90 IPR003349 -
Rops11g01963 1050 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Rops11g01963 1050 MobiDBLite consensus disorder prediction 128 145 - -
Rops11g01963 1050 Gene3D - 816 958 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01963 Rops-Chr11 31653047 31662895 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01963 774 984 JUMONJI Transcription Factor Family AT1G30810 45.972 1.58e-48 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Rops11g01963 JmjC 3.1e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01963 K11446 - gmx:100801775 1612.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01963 11 31653047 31662895 Rops11g01963 11 31653047 31662895 ECH