Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01959 ATGGAACTGCGGTGCTGGCAGAGAAACTATCAAGGAGCACTGTCCAATGTGGTTTTGGGCTTTTCTGTAAGAACTGCAACTACCCATACTCCTCAATTTTTGGGTCTGCCACAGGGAGCATGGTTTCAAGATGGTGGGTTTGAAACTGCAGGAGAAGGAATTGTTATTGGGTTTATTGACACTGCATCTGCTATAAGCAGAGGAATATTTCATTCATCTCAAGACTATGCTTCTCCTTTTGATGGTGCACGCATACAGCATCGGTTGCAGCAGGAAACCATGGGATTTGGCCAATATTTTCAGAAAAAAGTTGTTAAATTTGGTGCAGTTGCCAGTATCTGTGGTGGACTAAAAGCAAACTATGGTAATGCTTCCCCAAAGGCTGCTTGGAGTTTTCTTGGCACTGATTTGGTCAAATTTCTAGGTGAGAATTTTGCAATGGTATCTGGCACAAGTATGGCTGCACCACATGTTGCTGGTCTTGCTGTGTTAATTAGGCAAAAGTTCCCCAATCTCAGTCCTGCAGCCATTGGATCTGCACTTTTCACTACTTCCTCTCTGCATGACCAGAGTGGTGGCCCAATAATGGCTCAGCGATCATATGCCTCTCCAGACCTAACCCAATCTCCAGCAACTCCTTTTGACATGGGAAGTGGTTTTGTGAATGCAACTGCAGCATTGAATCCGGGTTTTATTTTTTATTCCTGTTATGATGATTACATGTCATTTCTACATGGTATCAACGGTTCAGCCTCTGTGGTGCTAAACTGCACTGGTCAAAATTGTGGGCATTATTATTCTACTGTATATGGTCTTGATCTGAACTTGCCCTCAATCACTATATCAAAGCTAAACCAATCTAGAATAGTGCAGAGTACAGTCCAAAACATTGCCGAAAATGAAACTTACAGTGTTGGTTGGAATGCTCCTTATGGAGTTTCAGTGAAAGTATATCCAACTATTGCTAATGGTGAGAGGCAGGTTACTCAGTTATCTCCTTCATTTCTTAAATCTGAGGGAGTGCCTGTGTATCGCACTGTTCAGCATTCTGGGGAATTTGTTATTACCTTTCCGAGGGCATACCACTCTGGCTTCAATTGTGGTTTCAAGTGTGCAAAGGCTGTGAATGTGGCTCCTGTTGATTGGTTAATGCATGGCCAGAATGCTGTTGAGCTTTACAGTTTACAATGCCGTAAGACATCATTATCACATGACAAGCTGTTATTTGGATCAGCACTGGAAGCTGTGCGAGCCCTGGCAGAGCTAGCTCTTCATGGAAAGGAAACTCCAAAAAATTTGAAATGGAGTAGTGTCTGTGAGAAAGATGGAGTTCTTACTAAGGCATTTAATACAAGGATAAAGATGGAAGAAGAGAGGCTAGACTGCCTTCCAACTCATTATAAGTTGCTGAAGATGGACAATGACTTTGATATGCACACAGAAAGAGAATGTTTCTCTTGCTTTTATGATTTGCACCTATCTGCTGTTACCGTGGAAGAATGTCCAAATGAGGCTTTCACAGATACCTCAGCAGATAAGTGCTGGGAATCAGTTCTAAAGAGACTACTTGATGAAATCATGAGGAGAAGGAGTTTAGGTGAACTAGGACTTCCTCCCTTAAAGCTTCTGAAAAGCATCAACGGTCTTAGAATGTTTGGCTTCCTTTTACCATCCATTATTCAGGCCATCGAAGCTCTAGATCCTGGTCATCAGTGTGCAGAGTACTGGAATCAAAAAGTTGACCCTACGTCTTCAATCAGTGTCATTGATAACTATAAGGTCACATGTGGTTCAAGTTGCTCTTTAGATGATGTCAATACCAAGGATGACACAGGAGGAAGTTGTCATTCTCTTGAAGAGATGAAATCAATACTACAAAGGGCAAGTCCTGATGAGTTAAGCATAATGCATAAATTACTCAGCTCTGATGCACAGTGCTCACAGTGGAGAATGGCATTGATATCCATGATAGATGAGATCCAGAAAGCTTGTAGATAA 1998 0.4199 MELRCWQRNYQGALSNVVLGFSVRTATTHTPQFLGLPQGAWFQDGGFETAGEGIVIGFIDTASAISRGIFHSSQDYASPFDGARIQHRLQQETMGFGQYFQKKVVKFGAVASICGGLKANYGNASPKAAWSFLGTDLVKFLGENFAMVSGTSMAAPHVAGLAVLIRQKFPNLSPAAIGSALFTTSSLHDQSGGPIMAQRSYASPDLTQSPATPFDMGSGFVNATAALNPGFIFYSCYDDYMSFLHGINGSASVVLNCTGQNCGHYYSTVYGLDLNLPSITISKLNQSRIVQSTVQNIAENETYSVGWNAPYGVSVKVYPTIANGERQVTQLSPSFLKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFKCAKAVNVAPVDWLMHGQNAVELYSLQCRKTSLSHDKLLFGSALEAVRALAELALHGKETPKNLKWSSVCEKDGVLTKAFNTRIKMEEERLDCLPTHYKLLKMDNDFDMHTERECFSCFYDLHLSAVTVEECPNEAFTDTSADKCWESVLKRLLDEIMRRRSLGELGLPPLKLLKSINGLRMFGFLLPSIIQAIEALDPGHQCAEYWNQKVDPTSSISVIDNYKVTCGSSCSLDDVNTKDDTGGSCHSLEEMKSILQRASPDELSIMHKLLSSDAQCSQWRMALISMIDEIQKACR* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01959 665 ProSiteProfiles JmjC domain profile. 201 394 IPR003347 -
Rops11g01959 665 Pfam Fibronectin type-III domain 273 320 IPR041469 -
Rops11g01959 665 Pfam JmjC domain, hydroxylase 327 377 IPR003347 -
Rops11g01959 665 Pfam F/Y rich C-terminus 496 578 IPR003889 GO:0005634
Rops11g01959 665 SMART fyrc_3 493 585 IPR003889 GO:0005634
Rops11g01959 665 SUPERFAMILY Subtilisin-like 137 228 IPR036852 GO:0004252|GO:0006508
Rops11g01959 665 ProSitePatterns Serine proteases, subtilase family, serine active site. 150 160 IPR023828 -
Rops11g01959 665 Gene3D Cupin 326 437 - -
Rops11g01959 665 PANTHER LYSINE-SPECIFIC DEMETHYLASE 328 638 - -
Rops11g01959 665 Pfam Subtilase family 135 189 IPR000209 GO:0006508|GO:0008236
Rops11g01959 665 ProSiteProfiles Serine proteases, subtilase domain profile. 1 227 - -
Rops11g01959 665 SUPERFAMILY Clavaminate synthase-like 329 414 - -
Rops11g01959 665 Gene3D - 464 573 - -
Rops11g01959 665 ProSiteProfiles FYR domain FYRC motif profile. 489 579 IPR003889 GO:0005634
Rops11g01959 665 SMART cupin_9 137 394 IPR003347 -
Rops11g01959 665 Gene3D Peptidase S8/S53 domain 141 240 IPR036852 GO:0004252|GO:0006508
Rops11g01959 665 Gene3D - 246 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01959 Rops-Chr11 31633189 31640687 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01959 102 328 Subtilisin-like Serine Gene Family AT4G20430 53.030 5.92e-76 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Rops11g01959 FYRC 3.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01959 - - gmx:100796456 350.903