Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01949 ATGGAGACTAAATTTGAGGGGAAAAATAAGTATTTGTATGGACCAGTGGTACCAGAGATGAAGAGTGTTGGGAAGAGAAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGGGATCTTTTGACTGCTAAACAATTGAATTCAGTGCCATCAGATTGTAGTAGTCGTCAATTGTTCCCTACCGATCCTGAAATACCTTCAAATGCTGATACTTCTAACAATTTGACTTCTGGTTGGGAAGATATCAACCATGGGGAAGGAAAGAGAGAATTGGAGAAGAGGAGGAGGGGTGTTGTTGCTGAAGAAGGGGTGGAGATGAATGATGAAATTGGTTCTCTTAATTTGAACCTTGGGGGTCAAGTATATCCTATCATGGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGATGACTACGACTACTTCGAACCGTGCTGTTTGTCAGGTGGAAGATTGTAGGGCTGATCTTAGTAATGCAAAGGATTACCATCGTCGCCACAAAGTTTGTGATATGCATTCTAAGGCAAACAAGGCACTAGTGGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCACGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGAAGACGTTTGGCAGGCCACAATAAGAGGAGGAGGAAAACTCATCCTGATAATACTGTAGTTAATGGAGGCTCTCTGAATGAAGAAAGGGGCAGTAGCTATCTGTTAATGAGTCTGCTAAGGATACTGTCCAATATGCATTCCAATGGCTCAGATCAAACGAGAAACCAGGATGTTGTATCTCGTCTGCTGGGGAACCTGGCAAGCTTGGCTGGTACAATCAATGGAAGAAATATAGCATCCTTATTGGAGGGATCTCAAGATTTGGTAAAAGCTGAGACATCTGGAGCTGCACAAAACGTTCCAAACACAAATTCAAATGGTCCTGAACCATCCAGACCTTTTGATTCTTCTATCAAGATCAGTAATGGTATACTCCATCAGGACCCTCCAGAGTCTAGGTCACAGTGTGAGATGGTTCCTGCTAATGATATGGCACAAAAATGTACACCTTCAGGCAGTGGTGGAGTAGGAAGTTTAAAATCTCATTTGGCACCAGAGTCCTCAAATGGACTTCTGTCAAGGGGTAGCCTTCCACCCCAATCAGTTGCAGCAGAGACTACAGTTGGCAGAAATGGGTTAAGTAATATTGACCTGAATAATGTATATGATGACGTGCAAGATCATGTTGAGAACCCTGGGAATTCTCAACCTCTTGTGGCTTCAGGGTTTGGATCTCTTGGTCATCCTTCATGGGTACAATGCAACTCTCTCAAGTCAAGCCCACCGCAGACAAGTAGAAACTCGGACTCAACCTCTACTCAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGAGTCGTACAGATCGAATTGTTTTCAAACTCTTTGGCAAGGATCCAAATGATTTTCCCCTTGTTCTCCGATCACAGATCCTTAACTGGTTATCCCACAGTCCCACCGAGATAGAAAGCTATATAAGGCCAGGCTGTATCCTGTTAACCGTATATCTCCGCCTAGAAAATTCTGCATGGGAGGAGCTATGCTATAATCTAGGATCCAGCTTGAGAAAGCTTATTGACGCATCAAATGATTCTTTTTGGAGAACAGGATGGGTATATACAAGGGTGCGGCACTCTGTAGCTTTTCTGTATAATGGTCAGGTGGCCTTAGATGTGCCGTTACGCCTCAAAAGCCCACAAAATTGTCAGATTTTGAGCATTAAACCACTTGCAGTTTCTGCAAGTGCAAGTGCAAAATTTATTGTGAAAGGATTCAACCTTTTCTTGTCTAACACTAGGTTGCTCTGTGCACTTGAAGGGGAGTATCTGATACAAGATAGTTGTCATGATTTGATTGATGGTGCTGATGCAGCCATTGGACATCATGAGCTTCAGCATCTCAGCTTCTCTTGTCATATACCAAATGTGACTGGAAGAGGGTTTATTGAGGTGGAAGATAATGGTCTTAGCAGCTGTTATTTTCCATTCATAGTTGCGGAGCAACAAATTTGTTCAGAAATCTGTAAGCTGGAGGATGTCATTGAGGCAGCAGACACTGCTGATGACATCCAGATAAAAACCAAACTAATTGAAGAAAAAACTCAAGCATTATATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAAGTCGTGCGAAAGTTAGGCTAGGTTCAATGGCACCGGTTCAAGATCGCTTCCATTTTAATCGGTTCACGTGGCTTATTGGCTTCTCTATGGACCATGATTGGTGTGCTGTGATGAAAAAACTCTTGGACATTATCTTTGAGGGTGCTGTTGATACAGGAGAGCATACCTCCATTGAGCTTGCATTGTTAGACATGGGTCTTCTACACAAAGCTGTAAAGAGAAATTGCAGGCCTATGTTGGAACTACTGTTAAACTTTGTGCCAATTAAAGCATCAGATGGCGGAGACAGTAAAGAGAAGCAAGTCAACAAGTCCCCTGACAGATTCTTATTTAGACCTGATGCTGTTGGGCCTGCTGGGTTGACTCCCCTTCATATTGCAGCAAGTACTAATGGCTCTGAGAATGTACTGGATGCATTAACTGATGATCCAGGAATGGTGGGAATTGAGGCATGGAAAAGTTCTAGGGACAATACAGGTTTGACACCAAATGACTATGCATCACTGCGGGGCTACTACTCCTACATTCAACTTGTCCAGAGGAAAACAAGCAAGAAATGTGAAAGTGAACATGTGCTTGATATCCCATGCACCCTTGTAGATGGGAACACAAAACAGAAGCAATCAAATGGGCACAAGTCATCAAAAGTTTCAAGTTTGCAGACTGAGAAGATTGAAATAACAACAATGCCACATCATTGTGGGCCCTGCCAGCGCAAGCTGGCATATGGCGGCACGAGAAGGGCACTGGTTTATAGGCCAGCAATGCTGTCAATGGTGGCCATTGCAGCTGTATGTGTCTGTGTGGCTTTGCTCTTCAAAAGTTCACCCAAAGTTTATTATGTATTCCAGCCCTTCAGTTGGGAATCATTGGAGTATGGTTCAATCTAA 3102 0.4304 METKFEGKNKYLYGPVVPEMKSVGKRSLEWDLNDWKWDGDLLTAKQLNSVPSDCSSRQLFPTDPEIPSNADTSNNLTSGWEDINHGEGKRELEKRRRGVVAEEGVEMNDEIGSLNLNLGGQVYPIMEGEEKSGKKTKMTTTTSNRAVCQVEDCRADLSNAKDYHRRHKVCDMHSKANKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDNTVVNGGSLNEERGSSYLLMSLLRILSNMHSNGSDQTRNQDVVSRLLGNLASLAGTINGRNIASLLEGSQDLVKAETSGAAQNVPNTNSNGPEPSRPFDSSIKISNGILHQDPPESRSQCEMVPANDMAQKCTPSGSGGVGSLKSHLAPESSNGLLSRGSLPPQSVAAETTVGRNGLSNIDLNNVYDDVQDHVENPGNSQPLVASGFGSLGHPSWVQCNSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLVLRSQILNWLSHSPTEIESYIRPGCILLTVYLRLENSAWEELCYNLGSSLRKLIDASNDSFWRTGWVYTRVRHSVAFLYNGQVALDVPLRLKSPQNCQILSIKPLAVSASASAKFIVKGFNLFLSNTRLLCALEGEYLIQDSCHDLIDGADAAIGHHELQHLSFSCHIPNVTGRGFIEVEDNGLSSCYFPFIVAEQQICSEICKLEDVIEAADTADDIQIKTKLIEEKTQALYFIQEMGWLLHRSRAKVRLGSMAPVQDRFHFNRFTWLIGFSMDHDWCAVMKKLLDIIFEGAVDTGEHTSIELALLDMGLLHKAVKRNCRPMLELLLNFVPIKASDGGDSKEKQVNKSPDRFLFRPDAVGPAGLTPLHIAASTNGSENVLDALTDDPGMVGIEAWKSSRDNTGLTPNDYASLRGYYSYIQLVQRKTSKKCESEHVLDIPCTLVDGNTKQKQSNGHKSSKVSSLQTEKIEITTMPHHCGPCQRKLAYGGTRRALVYRPAMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGSI* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01949 1033 MobiDBLite consensus disorder prediction 62 96 - -
Rops11g01949 1033 MobiDBLite consensus disorder prediction 443 474 - -
Rops11g01949 1033 Pfam SBP domain 148 221 IPR004333 GO:0003677
Rops11g01949 1033 MobiDBLite consensus disorder prediction 301 338 - -
Rops11g01949 1033 Gene3D - 789 967 IPR036770 -
Rops11g01949 1033 MobiDBLite consensus disorder prediction 62 81 - -
Rops11g01949 1033 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Rops11g01949 1033 Gene3D - 139 209 IPR036893 GO:0003677|GO:0005634
Rops11g01949 1033 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 90 915 IPR044817 GO:0003677
Rops11g01949 1033 FunFam Squamosa promoter-binding-like protein 14 139 209 - -
Rops11g01949 1033 MobiDBLite consensus disorder prediction 214 234 - -
Rops11g01949 1033 MobiDBLite consensus disorder prediction 301 344 - -
Rops11g01949 1033 MobiDBLite consensus disorder prediction 356 391 - -
Rops11g01949 1033 SUPERFAMILY Ankyrin repeat 801 915 IPR036770 -
Rops11g01949 1033 SUPERFAMILY SBT domain 146 227 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01949 Rops-Chr11 31468600 31477054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01949 24 1032 SBP-box Gene Family AT3G60030 48.529 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops11g01949 SBP 6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01949 - - gmx:100776125 1708.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01949 11 31468600 31477054 Rops11g01949 11 31468600 31477054 ECH
Rops2g05036 2 90356349 90362736 Rops11g01949 11 31468600 31477054 PCT