Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01933 ATGGTGATCATAAACCTTGGGAGGAAGAAGGAGGGTCAGGGAATGCAACTTGGGAAATACCAGTTGGGTAGGACTCTTGGAGAAGGCAATTTTGGAAAAGTCAAGTTGGCAAAGAACACAGATTCTGGACAACCTTTTGCTGTTAAGATCCTTGAAAAGAGCAAAATCATTGACTCCAATAACGCTGATCAGATAAAGAGGGAAATATCCACCTTGAAGCTCCTAAAGCATCCGAACGTTGTTAGATTATACGAGGTCTTGGCTAGCAAAACCAAAATTTATATGGTACTTGAGTACGTGAATGGAGGAGAGTTATTTGACAAAATTGCATCCAAAGGTAAACTCACAGAAGCTGATGGTCGGAAGATGTTCCAACAGTTGATTGATGGTGTTAGCTACTGCCACAATAAAGGTGTCTTCCACAGGGATCTTAAGCTAGAGAATGTACTTGTGGATGCCAAAGGGAACATAAAGATAACAGATTTTAACCTCAGTGCCTTGCCTCAGCATTTTAGGGCAGATGGGTTGCTGCACACAACCTGTGGAAGTCCCAACTATGTTGCCCCAGAGATTCTTGCCAATAGAGGCTATGATGGTGCAACATCAGATATATGGTCATGTGGTGTTATATTGTATGTAATTTTAACAGGATACCTTCCTTTTGATGACAGGAATCTTGCAGTTCTCTATCAAAAGATTTTTAAGGGAGATGTTCAGATGCCAAGATGGCTATCACCTGGTGCCCAAAACATTATAAAGAGGATTCTTGATCCCAATCCTAAAACCCGGATAACAATGGCTATGATCAAAGAAGATGAATGGTTCAAGGAGGGCTATACTCCTGCAAATCCAGATGATGAGGAAGAGGATGCATACATTGATGATGAAGCCTTTTCCATCAATGAAGTGTCACCTGAATCAGAACAGGGTAGTCCAAGATCACCAACACTTATCAATGCATTTCAGTTGATAGGGATGTCTTCATGCCTAGACCTCTCTGGCTTCTTTGAAAAAGAGGATGTCTCTGAGAGAAAGATAAGATTTACATCCAATCATTCATCAAAAGATTTGATCGAGAGGCTTGAGGACATTGTAACGGAAATGGGATTTAGAGTCCAGAAGAAAAATGGAATGTTGAAAGTTATCCAAGAGAACAAAACACAGAAAAGTCTAGCTAGCCTCTTAGTGGCAGCAGAGGTGTTTGAAATAGGTCCATCTTTGTATGTAGTAGAACTAAGTAAGTCTTATGGAGATGCTTCTGCATATAGACAGTTATGCAACAAGTTATCAAATGACTTGGGTGTTCACCCAGGGCACAGCTAG 1323 0.4082 MVIINLGRKKEGQGMQLGKYQLGRTLGEGNFGKVKLAKNTDSGQPFAVKILEKSKIIDSNNADQIKREISTLKLLKHPNVVRLYEVLASKTKIYMVLEYVNGGELFDKIASKGKLTEADGRKMFQQLIDGVSYCHNKGVFHRDLKLENVLVDAKGNIKITDFNLSALPQHFRADGLLHTTCGSPNYVAPEILANRGYDGATSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDVQMPRWLSPGAQNIIKRILDPNPKTRITMAMIKEDEWFKEGYTPANPDDEEEDAYIDDEAFSINEVSPESEQGSPRSPTLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNHSSKDLIERLEDIVTEMGFRVQKKNGMLKVIQENKTQKSLASLLVAAEVFEIGPSLYVVELSKSYGDASAYRQLCNKLSNDLGVHPGHS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01933 440 Pfam NAF domain 315 374 IPR004041 GO:0007165
Rops11g01933 440 Gene3D Kinase associated domain 1, KA1 318 435 - -
Rops11g01933 440 FunFam Non-specific serine/threonine protein kinase 315 436 - -
Rops11g01933 440 SUPERFAMILY Protein kinase-like (PK-like) 17 309 IPR011009 -
Rops11g01933 440 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 420 - -
Rops11g01933 440 CDD CIPK_C 319 430 - -
Rops11g01933 440 ProSiteProfiles Protein kinase domain profile. 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01933 440 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01933 440 FunFam Non-specific serine/threonine protein kinase 13 315 - -
Rops11g01933 440 SMART serkin_6 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01933 440 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Rops11g01933 440 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165
Rops11g01933 440 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Rops11g01933 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Rops11g01933 440 Gene3D Transferase(Phosphotransferase) domain 1 12 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01933 Rops-Chr11 31212687 31218795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01933 83 434 CBL-interacting serine-threonine protein kinases AT3G17510 73.371 0.0 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Rops11g01933 Pkinase 1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01933 K07198 - gmx:100815660 749.969