Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01927 ATGGAGGAAGAAAAAGTTGCAATAAAAAAATTGCTGGAAGTTGAAGAAAGGCCATATGATAATAATACAGATGCAACCCACAGGAGGGAGGAACCCTCCTTGCATAATACTTTGGGATCTACTACTCATCTCAGTTTGAGCCTGAATAACTCAGAACATCTTCCTCATCAAATTCATGGACTGCCCCTAACCCAAATTAGCATGCTGAGAGTCAAACTTGAGGAAGCCAAGAAGGAGAATGAGGATTTGAAAGCTATGCTAAATCAGGTTAATGAAAACTGCATTGCTCTTCAGAATCGCTTACTTTTGGCTATGCAGCCGCATCAACTATCTTCATCACCTCGAAATAATGATGACTTGCAGAAGGGAACTAGACAAGATGTGGAGAAAGCAGTGTTACCTACCAGGCAGTTCTTAAATATTGGTGAGTCCTCACCTTCAGATTGCAGCAAAACAGAAGGATTTGCCTCAGTAGAAAACATTTTGAAGAACATGGGTAAAAACCTTGCATATGAGTACCATGTTGAAGGTGAAATCAAAAGCCAAATAACATCACAAGAAACAAAACGCATAGAAGATCAAGCATCTGAAGTTACTTGCAGGAAAGCAAGAGTGTCCATAAGGGCACGATCAGATTTTGCTTTGATGGGTGATGGGTGTCAATGGAGAAAGTATGGACAAAAGATATCGAAGGGCAACCCTTGTCCCCGGGCCTACTATCGCTGCAGCATGGGAACTGCATGTCCAGTTCGTAAGCAGGTGCAAAGGTGTTTTAAGGATGAGACAGTTCTCATAACAACCTATGAAGGGAGCCATAATCATCCACTCTCACCAACTGCAATACCAATGGCAAGCTCAACATCTGCTGCATTGAACATGTTCCTTTCTGGCTCCACCACAAGTTTACATGGCAGCACTCTATCAAATTCACTTTTCTCTTCATTATCTAGTCCTCCCTCCACTGCTTTTGCTTCTTTTTCCCCATCTGCAACATGTCCCACAGTAACACTGGACTTCACTCAGCCCACTAATAACTATTTGCAATTCCAAATGGCCACTTCACCAGACCACAGACAAACATCATTCCCTTTGCCATTGCATGGTTACCCTCAAACATCTAAGGGGTTTAACTTGTGTTCCAAGCTTCCAACCATGATGACCCCAGAGAAAAACCTTGCCTTGGTGGATGTTGTGAGTGAAGCTATAGCCAATGATCCTTCTCTCAAGGCAGCATTATTTACAGCCATTTCCTCACTCACTAGAGATCCTCAGAACATCAATAACCACAGCCAATCTGGTAATAGTGGTTATGACCCTTGTTCTAAGAGGCCTACTATACCACCTCATCAGCCCTACACTACACAATTGATTGAGAGATAA 1380 0.4261 MEEEKVAIKKLLEVEERPYDNNTDATHRREEPSLHNTLGSTTHLSLSLNNSEHLPHQIHGLPLTQISMLRVKLEEAKKENEDLKAMLNQVNENCIALQNRLLLAMQPHQLSSSPRNNDDLQKGTRQDVEKAVLPTRQFLNIGESSPSDCSKTEGFASVENILKNMGKNLAYEYHVEGEIKSQITSQETKRIEDQASEVTCRKARVSIRARSDFALMGDGCQWRKYGQKISKGNPCPRAYYRCSMGTACPVRKQVQRCFKDETVLITTYEGSHNHPLSPTAIPMASSTSAALNMFLSGSTTSLHGSTLSNSLFSSLSSPPSTAFASFSPSATCPTVTLDFTQPTNNYLQFQMATSPDHRQTSFPLPLHGYPQTSKGFNLCSKLPTMMTPEKNLALVDVVSEAIANDPSLKAALFTAISSLTRDPQNINNHSQSGNSGYDPCSKRPTIPPHQPYTTQLIER* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01927 459 ProSiteProfiles WRKY domain profile. 211 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g01927 459 MobiDBLite consensus disorder prediction 17 42 - -
Rops11g01927 459 Pfam WRKY DNA -binding domain 218 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g01927 459 Coils Coil 66 100 - -
Rops11g01927 459 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 59 432 IPR044810 GO:0003700
Rops11g01927 459 SMART WRKY_cls 216 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g01927 459 SUPERFAMILY WRKY DNA-binding domain 209 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops11g01927 459 MobiDBLite consensus disorder prediction 422 439 - -
Rops11g01927 459 MobiDBLite consensus disorder prediction 17 34 - -
Rops11g01927 459 MobiDBLite consensus disorder prediction 422 459 - -
Rops11g01927 459 FunFam probable WRKY transcription factor 31 201 278 - -
Rops11g01927 459 Gene3D WRKY domain 200 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01927 Rops-Chr11 31124768 31132328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01927 69 341 WRKY Transcription Factor Family AT4G04450 41.503 3.79e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops11g01927 WRKY 3.6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01927 - - gmx:100781603 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01927 11 31124768 31132328 Rops2g05060 2 90720031 90727083 PCT