LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g01918	ATGGCTCTTTCTTTGACAAAAGAGTTATCTAGAACACTAATAGTACCCACCACTATCACATTCATTTTGTTTTTGGGTTTGTGCACCCCACTGTGTGCTGCTGCTGCTGCTTCCACTAACTTCATAGGATCAGAGAGCCTTAAGGTTTCTCCTTCTGAATTTGTTGGGTCAGTGAGAGCTGTTTTTGACATTTTGCAAGAAGTTACCTCTATTCTCTCTGAGTTTGGCTCTGGCTTTGGTGATTTTCGTCTTTCAAATGCAGTTTCTGACTGCCTTGATTTGCTTGATCTGTCCTCTGATGAGCTTGACTGGTCTGTTTCTGCTACTGAGAGTCCCAAAGGGAAGCATAACAGTACTGGGAACCTGAGTTCTGATTTGAGGACATGGCTAAGTGCTGCACTTGCAAATCAAGATACATGCATGGATGGATTTGAAGGTACCAATAGCATAGTGAAGGGTCTAGTATCAACTGGCCTTGGCCAAATGATGTCATTACTGAAACAACTCCTCACTCAAGTGAACCCTGCTTCAGATCAGTTCACAAAGCAGGGCCAATTTCCTTACTGGTTCAAACCAGGGGATAGAAAGCTACTCCAGGCAAATGGGATCCATGCTGATGCTGTTGTAGCTGCTGATGGGACTGGAAATTTTACTAAGGTGATGGATGCTGTGTTGGCAGCACCTGAATATAGCATGAAACGCTATGTGATATACATAAAGAAGGGTGTTTACCATGAGAATGTTGAGATCAAGAAGAAGAAATGGAACCTTATGATGATTGGTGATGGCATGAATGCTACTGTTATCTCCGGTAACCGGAGTTTCATTGACGGTTGGACCACCTTCCGGTCAGCTGCCTTTGCTGTGAGTGGCAGAGGATTCATAGCACGAGACATTACTTTCCAGAACACGGCAGGGCCAGAGAAGCATCAAGCAGTGGCACTAAGATCTGACTCTGACCTCTCTGTATTCTATAGATGTGGTATTTTTGGTTACCAAGATAGTCTTTATACACACACCATGCGCCAGTTTTATAGAGAATGCAAAATAAGTGGCACCGTTGATTTCATCTTTGGAGATGCCACTGCCCTTTTCCAAAACTGTCAAATACTAGCCAAAAAAGGGTTACCAAATCAAAAGAACACAATCACAGCTCATGGGAGAAAAGACCCTGATCAACCAACTGGTTTCTCCATCCAATTTTGTAACATCTCTGCTGATTCTGACCTTCTTCCATTTGTTAATTCCATTCAAACTTACCTTGGAAGACCATGGAAACCATATTCAAGGACAATTTTCATGCAATCTTACATAAGTGATGTGTTAAAACCAGAAGGGTGGTTAGAGTGGAATGGGGACTTTGCTTTGGATACATTGTACTATGCTGAGTACATGAATTCTGGGCCAGGTGCTGGACTAGCTAAGAGGGTTAAATGGCCAGGGTACCATGCTATGAATGATTCTAGCCAAGCTAGTAACTTCACTGTGACTCAATTTATTGAGGGGAATTTGTGGTTACCTTCAACTGGTGTAACGTTCACTGCTGGATTGGGAGTTTAA	1560	0.4282	MALSLTKELSRTLIVPTTITFILFLGLCTPLCAAAAASTNFIGSESLKVSPSEFVGSVRAVFDILQEVTSILSEFGSGFGDFRLSNAVSDCLDLLDLSSDELDWSVSATESPKGKHNSTGNLSSDLRTWLSAALANQDTCMDGFEGTNSIVKGLVSTGLGQMMSLLKQLLTQVNPASDQFTKQGQFPYWFKPGDRKLLQANGIHADAVVAADGTGNFTKVMDAVLAAPEYSMKRYVIYIKKGVYHENVEIKKKKWNLMMIGDGMNATVISGNRSFIDGWTTFRSAAFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECKISGTVDFIFGDATALFQNCQILAKKGLPNQKNTITAHGRKDPDQPTGFSIQFCNISADSDLLPFVNSIQTYLGRPWKPYSRTIFMQSYISDVLKPEGWLEWNGDFALDTLYYAEYMNSGPGAGLAKRVKWPGYHAMNDSSQASNFTVTQFIEGNLWLPSTGVTFTAGLGV*	520

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g01918	519	FunFam	Pectinesterase	200	517	-	-
	Rops11g01918	519	Pfam	Pectinesterase	206	503	IPR000070	GO:0030599\|GO:0042545
	Rops11g01918	519	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	57	159	IPR035513	-
	Rops11g01918	519	Gene3D	-	200	517	IPR012334	-
	Rops11g01918	519	Gene3D	Invertase/pectin methylesterase inhibitor family protein	37	174	IPR035513	-
	Rops11g01918	519	FunFam	Pectinesterase	33	175	-	-
	Rops11g01918	519	SMART	PMEI_2	37	172	IPR006501	GO:0004857
	Rops11g01918	519	PANTHER	PECTINESTERASE	78	507	-	-
	Rops11g01918	519	SUPERFAMILY	Pectin lyase-like	204	516	IPR011050	-
	Rops11g01918	519	CDD	PMEI-like_4	17	175	-	-

Showing 1 to 10 of 12 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g01918	Rops-Chr11	30923413	30927232	Dispersed/Tandem

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g01918	21	517	Carbohydrate Esterase	AT3G43270	65.049	0.0	711

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g01918	K01051		-	gmx:100801813	858.981

Showing 1 to 1 of 1 entries