Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01918 ATGGCTCTTTCTTTGACAAAAGAGTTATCTAGAACACTAATAGTACCCACCACTATCACATTCATTTTGTTTTTGGGTTTGTGCACCCCACTGTGTGCTGCTGCTGCTGCTTCCACTAACTTCATAGGATCAGAGAGCCTTAAGGTTTCTCCTTCTGAATTTGTTGGGTCAGTGAGAGCTGTTTTTGACATTTTGCAAGAAGTTACCTCTATTCTCTCTGAGTTTGGCTCTGGCTTTGGTGATTTTCGTCTTTCAAATGCAGTTTCTGACTGCCTTGATTTGCTTGATCTGTCCTCTGATGAGCTTGACTGGTCTGTTTCTGCTACTGAGAGTCCCAAAGGGAAGCATAACAGTACTGGGAACCTGAGTTCTGATTTGAGGACATGGCTAAGTGCTGCACTTGCAAATCAAGATACATGCATGGATGGATTTGAAGGTACCAATAGCATAGTGAAGGGTCTAGTATCAACTGGCCTTGGCCAAATGATGTCATTACTGAAACAACTCCTCACTCAAGTGAACCCTGCTTCAGATCAGTTCACAAAGCAGGGCCAATTTCCTTACTGGTTCAAACCAGGGGATAGAAAGCTACTCCAGGCAAATGGGATCCATGCTGATGCTGTTGTAGCTGCTGATGGGACTGGAAATTTTACTAAGGTGATGGATGCTGTGTTGGCAGCACCTGAATATAGCATGAAACGCTATGTGATATACATAAAGAAGGGTGTTTACCATGAGAATGTTGAGATCAAGAAGAAGAAATGGAACCTTATGATGATTGGTGATGGCATGAATGCTACTGTTATCTCCGGTAACCGGAGTTTCATTGACGGTTGGACCACCTTCCGGTCAGCTGCCTTTGCTGTGAGTGGCAGAGGATTCATAGCACGAGACATTACTTTCCAGAACACGGCAGGGCCAGAGAAGCATCAAGCAGTGGCACTAAGATCTGACTCTGACCTCTCTGTATTCTATAGATGTGGTATTTTTGGTTACCAAGATAGTCTTTATACACACACCATGCGCCAGTTTTATAGAGAATGCAAAATAAGTGGCACCGTTGATTTCATCTTTGGAGATGCCACTGCCCTTTTCCAAAACTGTCAAATACTAGCCAAAAAAGGGTTACCAAATCAAAAGAACACAATCACAGCTCATGGGAGAAAAGACCCTGATCAACCAACTGGTTTCTCCATCCAATTTTGTAACATCTCTGCTGATTCTGACCTTCTTCCATTTGTTAATTCCATTCAAACTTACCTTGGAAGACCATGGAAACCATATTCAAGGACAATTTTCATGCAATCTTACATAAGTGATGTGTTAAAACCAGAAGGGTGGTTAGAGTGGAATGGGGACTTTGCTTTGGATACATTGTACTATGCTGAGTACATGAATTCTGGGCCAGGTGCTGGACTAGCTAAGAGGGTTAAATGGCCAGGGTACCATGCTATGAATGATTCTAGCCAAGCTAGTAACTTCACTGTGACTCAATTTATTGAGGGGAATTTGTGGTTACCTTCAACTGGTGTAACGTTCACTGCTGGATTGGGAGTTTAA 1560 0.4282 MALSLTKELSRTLIVPTTITFILFLGLCTPLCAAAAASTNFIGSESLKVSPSEFVGSVRAVFDILQEVTSILSEFGSGFGDFRLSNAVSDCLDLLDLSSDELDWSVSATESPKGKHNSTGNLSSDLRTWLSAALANQDTCMDGFEGTNSIVKGLVSTGLGQMMSLLKQLLTQVNPASDQFTKQGQFPYWFKPGDRKLLQANGIHADAVVAADGTGNFTKVMDAVLAAPEYSMKRYVIYIKKGVYHENVEIKKKKWNLMMIGDGMNATVISGNRSFIDGWTTFRSAAFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECKISGTVDFIFGDATALFQNCQILAKKGLPNQKNTITAHGRKDPDQPTGFSIQFCNISADSDLLPFVNSIQTYLGRPWKPYSRTIFMQSYISDVLKPEGWLEWNGDFALDTLYYAEYMNSGPGAGLAKRVKWPGYHAMNDSSQASNFTVTQFIEGNLWLPSTGVTFTAGLGV* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01918 519 FunFam Pectinesterase 200 517 - -
Rops11g01918 519 Pfam Pectinesterase 206 503 IPR000070 GO:0030599|GO:0042545
Rops11g01918 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 159 IPR035513 -
Rops11g01918 519 Gene3D - 200 517 IPR012334 -
Rops11g01918 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 174 IPR035513 -
Rops11g01918 519 FunFam Pectinesterase 33 175 - -
Rops11g01918 519 SMART PMEI_2 37 172 IPR006501 GO:0004857
Rops11g01918 519 PANTHER PECTINESTERASE 78 507 - -
Rops11g01918 519 SUPERFAMILY Pectin lyase-like 204 516 IPR011050 -
Rops11g01918 519 CDD PMEI-like_4 17 175 - -
Rops11g01918 519 Pfam Plant invertase/pectin methylesterase inhibitor 83 166 IPR006501 GO:0004857
Rops11g01918 519 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01918 Rops-Chr11 30923413 30927232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01918 21 517 Carbohydrate Esterase AT3G43270 65.049 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01918 K01051 - gmx:100801813 858.981