Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01917 ATGGCTTCCTCATCTCAACTCTTCCTCCTTCTACTTGCAATCTTGTTTTCACAAACATGGGCTGATCACCCCAATGCTTCCACAACATTCAATACCAAACTCTCTTCCTTAAGATCTTTCTGCAGAACTACTCCATACCCAGAAGTTTGCTTCAACTCATTGAAGCTGTCCATATCAATAAATATAAGTCCAAACATCATCAACTACCTCCTTCAGTCCCTCCAAGTAGCAATATCTGAAGCCACAAAGTTGTCTAATCTATTCCACAATGCTGGACACTCAAACATCATAGAGAAGCAAAGAGGAGCAGTCCAAGACTGCAGGGAACTCCACCAATCCACATTGGTTTCTTTAAAAAGATCATTATCTAGGATTCATTCCCCCAACTCTAGGAACTTAGCTGATGCAAGAGCCTACCTCAGTGCAGCACTCACCAACAAGAACACATGTCTAGAAGGCCTAGATTCTGCTTCTGGTACCCTTAAGCCAGTTCTGGTGAATTCAGTGATTAACACTTACAAGCATGTGAGTAATTCTCTTTCTATGCTCTCTAAGCCAGGGAAGGTGTCTCCCAAAGGCCACAAGAACCGGCGTCTGATGAGTACTCCAACTTGGTTTTCAAGCAAAAACCATGGCCTCTTGAAAAGCTTAGATGGGGAAGAATATGACCCAAATGAAGTGCTTGTTGTGGCTGCAGATGGAACTGGGAACTTTAGCACCATCACTGAAGCCATCAACTTTGCTCCAAATAACAGCATGGATAGGACAGTGATTTATGTTAAAGAAGGGATTTATGACGAAAATGTTGAAATCCCAAGTTATAAGACAAACATTGTTATGCTTGGTGATGGAAGTGATGTCACTATCATAACTGGTAACAGAAGTGTAGCTGAAGGCTGGACCACTTTCAGATCTGCCACTCTAGCTACCAGTGACCTTTATTCCAACTCTAGTAGCTTCAAGAGCTACCTTGGGAGGCCATGGAGGGTCTTCTCTCGCACTGTTTTCCTTGAGTCCTATATTGATGACTTTATTGACCCAAAGGGTTGGTCAAAATGGTCTAATGATCAAGGCTTGGACACTTTGTATTATGGAGAGTATGAGAATTATGGACCTGGTTCAGGGGCTGATAATCGTGTAGAATGGCTTGGGTACCATTTAATGGATTACAATGATGCCTATAATTTCACAGTTTCAGAGTTCATAACCGGAGATGATTGGCTTGAGTCTACTTCATTTCCTTATGATGATGGGATTTGA 1260 0.4214 MASSSQLFLLLLAILFSQTWADHPNASTTFNTKLSSLRSFCRTTPYPEVCFNSLKLSISINISPNIINYLLQSLQVAISEATKLSNLFHNAGHSNIIEKQRGAVQDCRELHQSTLVSLKRSLSRIHSPNSRNLADARAYLSAALTNKNTCLEGLDSASGTLKPVLVNSVINTYKHVSNSLSMLSKPGKVSPKGHKNRRLMSTPTWFSSKNHGLLKSLDGEEYDPNEVLVVAADGTGNFSTITEAINFAPNNSMDRTVIYVKEGIYDENVEIPSYKTNIVMLGDGSDVTIITGNRSVAEGWTTFRSATLATSDLYSNSSSFKSYLGRPWRVFSRTVFLESYIDDFIDPKGWSKWSNDQGLDTLYYGEYENYGPGSGADNRVEWLGYHLMDYNDAYNFTVSEFITGDDWLESTSFPYDDGI* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01917 419 Pfam Plant invertase/pectin methylesterase inhibitor 36 182 IPR006501 GO:0004857
Rops11g01917 419 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 185 IPR035513 -
Rops11g01917 419 Gene3D - 223 310 IPR012334 -
Rops11g01917 419 FunFam Pectinesterase 33 185 - -
Rops11g01917 419 Pfam Pectinesterase 309 405 IPR000070 GO:0030599|GO:0042545
Rops11g01917 419 NCBIfam pectinesterase inhibitor domain 7 184 IPR006501 GO:0004857
Rops11g01917 419 SMART PMEI_2 32 182 IPR006501 GO:0004857
Rops11g01917 419 ProSitePatterns Pectinesterase signature 1. 252 271 IPR018040 -
Rops11g01917 419 CDD PMEI-like_3 39 188 - -
Rops11g01917 419 PANTHER PECTINESTERASE 11 310 - -
Rops11g01917 419 Gene3D - 311 419 IPR012334 -
Rops11g01917 419 SUPERFAMILY Pectin lyase-like 225 416 IPR011050 -
Rops11g01917 419 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 185 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01917 Rops-Chr11 30900969 30903000 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01917 308 419 Carbohydrate Esterase AT2G26440 66.964 1.61e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01917 - - gmx:100776969 452.981