Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01916 ATGGCATTTCAGGATTTTGATCTTGTATCAGAACGAAGAAACGAGGAGAAATCAAAGCTGAGGAAGAAGATTATCATTGGTTCAGTTTCAATCATTCTTCTTGCATGTATTATAGGTGCTGCAGCATTTGTTGTTGTCAACAGATCTGGCCCTGAACACAAAACCAAGCAAGTGCCTACTACCTCAGCAGTACCCACCACCCATGTGGATCAAAATTCAAGGCTTGTGAAAGTGATATGCAGCTCAGCAGAATATAAAGAAAAATGTGAAAGTTCCATTAAGGAGGCATTGAAGAAGGACCCCAAATTGACACAACCCAAGGATCTTGTCATGGTTTCTATGATACTTGCTGAGAATGAGGTTACCAAGGCCTTCAACAAAACCTCCGAGTTGAAGTTTTCAAATGAGGAGGAGAAAGGAGCATATGAAGATTGCAAACAATTGTTTGCAGATGCCAAGGAAGAGCTGGGATTCTCTATCAATGAAGTTGGTGCAAATGATTTGGACAAGCTTTCATCAAAAGGTCCTGAATTGAACAACTGGCTCAGTGCAGTTATGTCTTACCAACAAACCTGCATTGATGGGTTTCCTGAAGGAGACATGAAGAAGCAATTCAAGAATCTGTTCAATGAATCCAAGGAACTAATGAGCAATTCCCTTGCTGTTGTGTCAGAGATGTCTTCAGTCTTTTCTGTGTTCAAAGGAGCTTCAAGCTTTCAATTACCATGGTTAAAAAATGATGCACCTGCACCTGGTCCTGGTGCTGGTTCTGCTCCAGTTCCTGCTCCTGGTCCTGGTTCAGCGCCTGTTCCTGCTCCTGGTCCTGGTTCAGCTCCTGTTCCTGCTCCTGCTTTTGGTCCTGGTCCTGCTTATGCTCCTGGACCTGCTCCTGGCTTGGCTCCTGCTCCTGGTTATGCTCCTGGACCTGCTCCTGCTCCTGCTTGGGTTAGCCCTGAGTTGCAGGGAACACTTGAGAAACCTACACCTAATGTCACTGTGGCACAAGATGGCAGTGGAAACTTCAAAACCATCTCTGAAGCTTTGGCAGCAATCCCAAAAACATACGAGGGAAGGTATGTTGTTTATGTCAAAGAAGGAGTATATGATGAGACGGTGACGGTGACAAAGAAAATGGGAAATGTAACCATGTATGGTGATGGATCACAAAAGAGCATCATCACTGGCAACAAAAATTTCGTGGATGGAGTCAGGACTTTCCAAACTGCCTCCTTTGTGGTACTTGGAGATGGATTCGTGGGCAGAGACATGGGATACAGAAACACAGCTGGTGCAGAAAAGCACCAGGCAGTGGCTGCAAGAGTGCAAGCAGACCGTGCAGTGTTTATCAACTGTGCCTTTGAGGGCTACCAAGACACTCTATATTGCCAAACACATAGACAATTCTACCGTGACTGTGTAATTTCTGGCACAATTGACTTCATCTTTGGTGATGCAGCTGCTGTGTTCCAAAACTGCACCATGGTTGTTAGAAAACCACTGGACAACCAGCAAAACATTGTCACAGCTCAAGGGAGAATTGACAAGGCTGAAAACACTGGCATTGTTCTGCAAAAGTGTGTGATCAAGGCTGATAATGATCTTGTTCCCGTGAAGGATAAGTTTAGGACCTACCTTGGAAGGCCATGGAAAGAGTACTCAAGAACCATCATCATGGAATCAGATATTGGGGACTTGATTCACCCTGATGGGTGGTTACCTTGGGAAGGTGATTTTGGACTCAATACATTGTATTATGCTGAGTTCAACAACAACGGACCTGGTGCTAACACCAATGCCAGGGTCAAATGGCCTGGACGCAAAGATATTAACAGAGATGAGGCTGTCAAGTATACAGTGGAATCATTCTTGCAAGGGACATGGATCAATGGCACAGGTGTCCCAGCTCAGCTGGGCTTGTAA 1920 0.45 MAFQDFDLVSERRNEEKSKLRKKIIIGSVSIILLACIIGAAAFVVVNRSGPEHKTKQVPTTSAVPTTHVDQNSRLVKVICSSAEYKEKCESSIKEALKKDPKLTQPKDLVMVSMILAENEVTKAFNKTSELKFSNEEEKGAYEDCKQLFADAKEELGFSINEVGANDLDKLSSKGPELNNWLSAVMSYQQTCIDGFPEGDMKKQFKNLFNESKELMSNSLAVVSEMSSVFSVFKGASSFQLPWLKNDAPAPGPGAGSAPVPAPGPGSAPVPAPGPGSAPVPAPAFGPGPAYAPGPAPGLAPAPGYAPGPAPAPAWVSPELQGTLEKPTPNVTVAQDGSGNFKTISEALAAIPKTYEGRYVVYVKEGVYDETVTVTKKMGNVTMYGDGSQKSIITGNKNFVDGVRTFQTASFVVLGDGFVGRDMGYRNTAGAEKHQAVAARVQADRAVFINCAFEGYQDTLYCQTHRQFYRDCVISGTIDFIFGDAAAVFQNCTMVVRKPLDNQQNIVTAQGRIDKAENTGIVLQKCVIKADNDLVPVKDKFRTYLGRPWKEYSRTIIMESDIGDLIHPDGWLPWEGDFGLNTLYYAEFNNNGPGANTNARVKWPGRKDINRDEAVKYTVESFLQGTWINGTGVPAQLGL* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01916 639 ProSitePatterns Pectinesterase signature 2. 474 483 IPR033131 -
Rops11g01916 639 Gene3D - 325 639 IPR012334 -
Rops11g01916 639 SUPERFAMILY Pectin lyase-like 327 634 IPR011050 -
Rops11g01916 639 MobiDBLite consensus disorder prediction 250 281 - -
Rops11g01916 639 NCBIfam pectinesterase inhibitor domain 65 225 IPR006501 GO:0004857
Rops11g01916 639 Pfam Plant invertase/pectin methylesterase inhibitor 75 221 IPR006501 GO:0004857
Rops11g01916 639 FunFam Pectinesterase 72 227 - -
Rops11g01916 639 SMART PMEI_2 71 222 IPR006501 GO:0004857
Rops11g01916 639 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 227 IPR035513 -
Rops11g01916 639 MobiDBLite consensus disorder prediction 254 281 - -
Rops11g01916 639 Coils Coil 135 155 - -
Rops11g01916 639 FunFam Pectinesterase 324 639 - -
Rops11g01916 639 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 227 IPR035513 -
Rops11g01916 639 CDD PMEI-like_3 79 228 - -
Rops11g01916 639 PANTHER PECTINESTERASE 37 629 - -
Rops11g01916 639 Pfam Pectinesterase 330 625 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01916 Rops-Chr11 30891288 30894081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01916 1 639 Carbohydrate Esterase AT4G33230 39.970 4.94e-157 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01916 - - gmx:100796485 870.537