Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01913 ATGTCAGAAGCAATTGTAGATGGATACCCAAAGCATGCTCACTATGAATGCATTCATACAAGATATCCTTATCTATGTGCTGAAACCTTGATGAGATTGGGTTCAGGGAATCAAAATGTTAATACCACTGAGGCTCTTGTTAACAAAACCATATTTGAGACCAATTTGCCAACTTCATATTTTGCTGAATTCAAGATTCAGGACGCTGAACATGTCCATTCTGTGGCAGACTACTGTGAAGAGCTAATGGGGATGTCACTGAAAAGATTGGACCAATCCCTGAAAGCACTGAAATCCCCAAGAAGAAACAAGAATGACATCCAAACATGGCTAAGTGCTTCTCTAACTTTCCAACAATCTTGTAAAGACTATGCAGATGCACACAGCTCTAAACTCTCTGGAGATGATGACCTAATGAAAAGGATGTCTAAGAAGATGGACTATCTTTCTAAACTAGCAAGCAACTCATTATCCCTTGTTAACAGAATCACCAGAAGCACCATCCCAAGGAGCACAATAGCCAGCCACAAACTTGATGGTGTTAATAATGAAAAGGAGGAAAATGAATTTCCCAAATGGGTGTCTGCCCAAGGAAGAAAACTGCTTCAGGGAGTCACCATAAAAGCAAATGTCATAGTTGCACAAGATGGTTCAGGAAACTATAAGACAGTTTCTGAAGCCATTAAGGCTGCTACAGGGACAAGTTTTGTGATTTATGTGAAGGAAGGGGTTTATAAAGAGAAGATTCGCGCTAATAAGGATGGGATCACCTTGATAGGAGATGGCAAATATTCTACTCTCATTGTTGGAGATGACAGTGCTGCAAAGGGTGCTAGCTTACCTGAGTCTGCCACATTTAGTTAG 864 0.4051 MSEAIVDGYPKHAHYECIHTRYPYLCAETLMRLGSGNQNVNTTEALVNKTIFETNLPTSYFAEFKIQDAEHVHSVADYCEELMGMSLKRLDQSLKALKSPRRNKNDIQTWLSASLTFQQSCKDYADAHSSKLSGDDDLMKRMSKKMDYLSKLASNSLSLVNRITRSTIPRSTIASHKLDGVNNEKEENEFPKWVSAQGRKLLQGVTIKANVIVAQDGSGNYKTVSEAIKAATGTSFVIYVKEGVYKEKIRANKDGITLIGDGKYSTLIVGDDSAAKGASLPESATFS* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01913 287 SUPERFAMILY Pectin lyase-like 205 286 IPR011050 -
Rops11g01913 287 Gene3D - 204 287 IPR012334 -
Rops11g01913 287 NCBIfam pectinesterase inhibitor domain 16 162 IPR006501 GO:0004857
Rops11g01913 287 Pfam Pectinesterase 210 286 IPR000070 GO:0030599|GO:0042545
Rops11g01913 287 Gene3D Invertase/pectin methylesterase inhibitor family protein 14 165 IPR035513 -
Rops11g01913 287 PANTHER PECTINESTERASE 17 286 - -
Rops11g01913 287 SMART PMEI_2 9 159 IPR006501 GO:0004857
Rops11g01913 287 CDD PMEI-like_3 17 165 - -
Rops11g01913 287 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 17 163 IPR035513 -
Rops11g01913 287 Pfam Plant invertase/pectin methylesterase inhibitor 17 159 IPR006501 GO:0004857
Rops11g01913 287 FunFam Pectinesterase 10 164 - -
Rops11g01913 287 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01913 Rops-Chr11 30843203 30844828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01913 79 285 Carbohydrate Esterase AT2G45220 35.577 1.74e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01913 K01051 - gmx:100795439 406.371