Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01904 ATGGCTTCTGATTTCGTTCCTCCTCCACCAAAACACTCGCACTCTCTCTCACACGACATTCTTATAACCGTAACGGTTTTCGCCGTCACCGTCACCGTCTTCCTCGCTCTCTACTTTTTCCTCCGTTACCGTTGCCGTTCTCTCCGCCGTCTTAATCCTTCTTCAGCCTCAAACTTCTCCTCCGGCAATCGGATATCGCCGGAAATCACTTCGTCTTCCGAAGTCGACTCTCTCCCGCTGTTCGCTTTCTCTTCCATCAATAACCGCTCCTCCTCCGCCACCGTCGCCGGCGACTGTGCCGTTTGCCTTTCGAAGTTTGAGTCGCGCGACGTTCTCCGTCTTCTCCCTCTCTGTTGCCACGCTTTCCACGTTGAATGTATTGACACGTGGCTCCGATCGAACCTCACCTGTCCGCTATGCCGATCCGCCGTGTTCGCATCGGAATCGGAACTCATGAAGGTTTTCCGGTCATCATCCACCGCAGCCGGTGACAGTTTCCGGCTGGAGATAGGGAACGTCAGCAACCGCCGTGGAGCCGCATCTGAAAACGCCACCGAAGAAAATGGTGGGAGGTCATATTCCGTTGGCTCGTTAGAGTATGTTGTCGATGTGGAGGCTGAGATTCCGGTCAGCCACGCTCACCGGAGAATCGTATCCGGCGAGAAAGATGACACACTGGCGGTGGAGACTCCGGGGAATTCTCAGCCGAGCTTGGCTGGCGAGGTAGGCAGTGAAAGTAGCTGGTTGAAGGATTATGTTGATCGTCTATCGGCTACGATGTCGTTTCGAAGCTCTGGAAGGTTCTTCAGTGGGAGTGGTCGTCGAAGCGACGTCGTTGCAGGAGGAGATTACGAAGTGGAAGCTAACCGTTTTGGGGAAGAAATCAGTGAAATGTTTCGTTGGCTCTCAGGGGTTTGA 918 0.5403 MASDFVPPPPKHSHSLSHDILITVTVFAVTVTVFLALYFFLRYRCRSLRRLNPSSASNFSSGNRISPEITSSSEVDSLPLFAFSSINNRSSSATVAGDCAVCLSKFESRDVLRLLPLCCHAFHVECIDTWLRSNLTCPLCRSAVFASESELMKVFRSSSTAAGDSFRLEIGNVSNRRGAASENATEENGGRSYSVGSLEYVVDVEAEIPVSHAHRRIVSGEKDDTLAVETPGNSQPSLAGEVGSESSWLKDYVDRLSATMSFRSSGRFFSGSGRRSDVVAGGDYEVEANRFGEEISEMFRWLSGV* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01904 305 CDD RING-H2_EL5-like 98 141 - -
Rops11g01904 305 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Rops11g01904 305 FunFam E3 ubiquitin-protein ligase ATL6 60 147 - -
Rops11g01904 305 Pfam Ring finger domain 98 141 IPR001841 -
Rops11g01904 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 145 IPR013083 -
Rops11g01904 305 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 14 213 - -
Rops11g01904 305 SUPERFAMILY RING/U-box 74 146 - -
Rops11g01904 305 SMART ring_2 99 140 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01904 Rops-Chr11 30739424 30740341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01904 75 221 C3H Transcription Factor Family AT2G18650 31.731 2.00e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01904 K10663 - gmx:100804962 340.502