Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01903 ATGATGTTCCATTCTCAGGGTTCATCAAGACATTGTAGTCTCCTTGCTGTCCTGAGTGGTAAATCACGTGACATTAAACAAAAGCAGAAGCAAGATTCTGCTTCTGAGGATCAATCTCCATACCCCTTTCCAGAACTTTCTTCCACTGGGCGCCTTGAGGTCAAAGTATTGACCAAACCTACTGTTGATGAACTTGGTCGTGTTCTTGAACAACTTCAGCCGGATTTTGTTTACCTGCAAGGCCAGCAGCTAGAAGATAAGGGAGAAATTGGGTCTCTTGTATGGGAAGATTTTGACCTGTCTACCCCAGAAGCCTTATGTGGATTATTTCCTTCCAAATTACCTAATACTGTTTATTTGGAAACTCCTAAGGGAGAAAAATTGGCAGAGGCACTCCGTTTAAAGGGAGTTCCTTACACTATCTACTGGAAAAATGAATTTTCTAAGTATGCAGCTTCACATTTTCAACAAGCTTTTTTCTCAGTGGCAGAGAGCACATCCTGCCATACATGGGATGCTTTCCAGCTTGCTCTTGCATCTTTTAGACTATACTGTGTACAAAACAATGTATTACCTCATAACAGCCGGAAGGGTGGTGGTAAGCACGGGCCACAAATTCTTGGGGACCCTCCCAACATTGATGTTAGTCCATGTGAAGCAGACATAAAGGAAGAAGAAAGTTCACCTGAGACGATTTCTGCTATAAAGATATATGATGATGACGTGAACATGAGATTTCTTGTTTGCGGAGTTTCCTGCACATTGGATGCATGTTTATTGGGGTCATTAGAGGACGGACTTAATGCTCTCCTATGTACAGAAATACGTGGATGTAAACTTCACAACCGGACAAGTGCTACACCACCACCTCTTCAGGCAGGAACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACATGCAGTTCTTCTCATATATCACTTTTGCTTTTGGAGAATCATATTAAGAAAGAGCTCATCGAGAAGAGTCAACTTGTCCAGGCACTTCCTAATCATGAACAAAGCAAATTACCTTCCTCCGAGCCTCGAAGATCAGCCTCAGTAGCCTGTGGATCTAGTGTATTTGAAGTTTGTTTGCGAGTTCCGACATGGGCTTCACAGGTTCTGAGACAGCTTGCACCAAATGTGTCATTCCGCAGCCTAGTTATGTTGGGAGTTGCTAGTATTCAAGGACTGCCAGTTGCATCTTTCAATAAAGATGATGCCGAACGTCTCCTTTACTTTAGTACAAGGCAGGAGAAAGAAAACTGTCCTAAAGATCCCGTTTTCTCTGAGCTTCCTAGTTGGCTGATGCCTCCAGCACCTAGTCGAAAAAGATCTGAACCATGCTCTAGAACAAAGTCTAGTAATGCCAGGGGCCTGGAAGTTGAAGATATTGGTAGTGATAGACAGAAATTAAATTTTGCTGCAATGAGGCCAATCCCTCACTCTCATCGTCGGAAGATTCTCCCTTTTTCTGGATTGTCTGAAGGTGAAAGATATGATGGAGACCATGGAAAATCAAATCAGCCACCCGCTCCTACTAAGCACAATGTTATAGGCCCTAATTCAGTTACACATAGGAAATCTGTGTCAAACTCATTTCAAGCTCACCAGATTATTTCTTTGAATCCACTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCAATACGAGTTTGCTCAGAGGAGGAATTCCTGAGGGATGTAATGCAGTTTCTGATGCATCGAGGGCATACTCGTCTCATTCCGCAAGGTGGGCTTGCTGAGTTCCCTGATGCCATTCTGAATGCAAAACGCCTTGACCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCACGTTGGGAATGGTATCAATTGGAAAGGACAAGTATTCTCAAAGATGCGCAATCACACTCTGACAAATAGAATGACCGGTGTTGGCAATACACTCAAAAGACACTACGAAACTTATCTTTTAGAATATGAATTAGCTCATGATGACGTAGATGGAGAATGCTGCTTGTTGTGTCACAGTAGCGCAGCAGGTGACTGGGTGAACTGCGGTATATGCGGCGAGTGGGCTCATTTTGGCTGTGATAGGCGGCAGGGACTTGGAGCATTTAAGGACTATGCTAAAACTGATGGGCTGGAGTACGTTTGTCCTCATTGCAGCATTTCAAATTTCAGTAAAAAATCTCAGAAAACTACTGCAAATGGTTATTAA 2223 0.4318 MMFHSQGSSRHCSLLAVLSGKSRDIKQKQKQDSASEDQSPYPFPELSSTGRLEVKVLTKPTVDELGRVLEQLQPDFVYLQGQQLEDKGEIGSLVWEDFDLSTPEALCGLFPSKLPNTVYLETPKGEKLAEALRLKGVPYTIYWKNEFSKYAASHFQQAFFSVAESTSCHTWDAFQLALASFRLYCVQNNVLPHNSRKGGGKHGPQILGDPPNIDVSPCEADIKEEESSPETISAIKIYDDDVNMRFLVCGVSCTLDACLLGSLEDGLNALLCTEIRGCKLHNRTSATPPPLQAGTFSRGVVTMRCDISTCSSSHISLLLLENHIKKELIEKSQLVQALPNHEQSKLPSSEPRRSASVACGSSVFEVCLRVPTWASQVLRQLAPNVSFRSLVMLGVASIQGLPVASFNKDDAERLLYFSTRQEKENCPKDPVFSELPSWLMPPAPSRKRSEPCSRTKSSNARGLEVEDIGSDRQKLNFAAMRPIPHSHRRKILPFSGLSEGERYDGDHGKSNQPPAPTKHNVIGPNSVTHRKSVSNSFQAHQIISLNPLPMKKHGCDRAPIRVCSEEEFLRDVMQFLMHRGHTRLIPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFSKKSQKTTANGY* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01903 740 Gene3D - 560 665 IPR036431 GO:0003677
Rops11g01903 740 MobiDBLite consensus disorder prediction 490 522 - -
Rops11g01903 740 MobiDBLite consensus disorder prediction 492 508 - -
Rops11g01903 740 SUPERFAMILY FYVE/PHD zinc finger 665 728 IPR011011 -
Rops11g01903 740 CDD ARID 564 662 - -
Rops11g01903 740 CDD PHD_ARID4_like 672 723 - -
Rops11g01903 740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 729 IPR013083 -
Rops11g01903 740 ProSiteProfiles ARID domain profile. 562 666 IPR001606 GO:0003677
Rops11g01903 740 MobiDBLite consensus disorder prediction 427 464 - -
Rops11g01903 740 SMART ARID_2 559 662 - -
Rops11g01903 740 SUPERFAMILY ARID-like 563 677 IPR036431 GO:0003677
Rops11g01903 740 Pfam ARID/BRIGHT DNA binding domain 565 662 IPR001606 GO:0003677
Rops11g01903 740 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 736 IPR042293 -
Rops11g01903 740 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01903 Rops-Chr11 30724264 30731907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01903 2 739 ARID Transcription Factor Family AT3G43240 64.807 0.0 963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Rops11g01903 ARID 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01903 - - gmx:100775894 1318.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01903 11 30724264 30731907 Rops11g01903 11 30724264 30731907 ECH