Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01898 ATGGGCAACAAGATGTGTATACCTTGTGCCACTCCAAAAAGTGAAAGAAAGGTTAGAGAACCTGCAAAACCACCTACTAATGTGCCTATCATAATTTACCCAAGCCAAGAAAACTCCTTGGAGGCCAATGCTAATCCTCCTCTTCCCACAAATGACACCCCATTTTTTCCATGCCAACTTTGCTATCATTCAAAGCATCTAGAAGACTCTTTCAACGTGGAGGGTTGTGCTCATTTTTACTGCACAAAATGCACTCTCAAATACATAATGTCCCAGCTCAGAGAAAACATAGTGACCTTCAAGTGCCCTGTGATAAATTGCCCTGGGGTCTTGACTTACAATTACTGCAAGCCAATTCTGCCAAACAAGTTGTCACTCATGTGGGAGAAGATTGTAGGTGAATCATCCATTCCAGATAAGAATAAGTTCTATTGTCCTTATAATAATTGCTCAGCATTGTTATTCCATGAGGCTCAAGAAGGAGGAGAGGACTTTAGAGTCTCAATTTGTCCTCATTGCAAGAGAAGCCTTTGTGTTCAGTGTAGAGCTCCTTGGCATTCAGAAATGAATTGTGAAGAGTTTCAGCAAATTAAGGATAAGGATGAGGAGTTGTTGTTCAATCTTGCCAAGGAAAGTAAGTGGAAACGGTGTCCAAATTGCAAACGTTTTGTTGAAAAGAAAAGTGGGTGTGATGTCATACAGTGCAGGTATAGCAGTGGCACCCCTAGTATCCGACAACCTCCATGTGAGTACACTGAACCTTCGGAGGTATATGAAGAGTTCACAACAGTGCCGCATGAAGGTGGAGCATGTTTTACTTCTGGTGTTCACACGGGTTTTGTTACAATTGTGGAACTAGCAAAGATCGTCATAGTAGACGTAGATGTTGTCGTTAAATGCAAGCATGGATATTTTCTGTATAAGTATCCTCTTGAAAAGTAG 942 0.413 MGNKMCIPCATPKSERKVREPAKPPTNVPIIIYPSQENSLEANANPPLPTNDTPFFPCQLCYHSKHLEDSFNVEGCAHFYCTKCTLKYIMSQLRENIVTFKCPVINCPGVLTYNYCKPILPNKLSLMWEKIVGESSIPDKNKFYCPYNNCSALLFHEAQEGGEDFRVSICPHCKRSLCVQCRAPWHSEMNCEEFQQIKDKDEELLFNLAKESKWKRCPNCKRFVEKKSGCDVIQCRYSSGTPSIRQPPCEYTEPSEVYEEFTTVPHEGGACFTSGVHTGFVTIVELAKIVIVDVDVVVKCKHGYFLYKYPLEK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01898 313 SUPERFAMILY RING/U-box 139 197 - -
Rops11g01898 313 SUPERFAMILY RING/U-box 201 235 - -
Rops11g01898 313 SMART ibrneu5 126 191 IPR002867 GO:0008270
Rops11g01898 313 CDD BRcat_RBR_unk 139 194 - -
Rops11g01898 313 Gene3D - 189 252 - -
Rops11g01898 313 SUPERFAMILY RING/U-box 52 138 - -
Rops11g01898 313 ProSiteProfiles TRIAD supradomain profile. 54 275 IPR044066 -
Rops11g01898 313 ProSiteProfiles Zinc finger RING-type profile. 58 106 IPR001841 -
Rops11g01898 313 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 37 249 IPR031127 GO:0004842|GO:0016567
Rops11g01898 313 Pfam IBR domain, a half RING-finger domain 139 191 IPR002867 GO:0008270
Rops11g01898 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 139 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01898 Rops-Chr11 30693233 30693985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01898 51 237 C3H Transcription Factor Family AT2G19610 30.151 1.98e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01898 K11975 - pvy:116125926 223.787