Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01887 ATGGAACACGGTGGAGGCTCCAAACTAACTGGAATTTGGCAAATTGTGAGACTAAAGGAAATGCTTCAAAAGTGGCAAATTGTCACCTTAGGCTCAAAAGCTTCCCATGTCAAGTATGTTGCTACTGATGGGAGTAGATCACCAATAATTAACAAAAGGATAACAAATGTTATGAGTTGTGACTCTGATGAGGATAGCTGCCAAAGTCCTGAACCACCACCTGATGTTCCAAAAGGTTACTTGGCAGTCTATGTTGGACCAGAGCTTCGGAGGTTCATCATTCCCACCAGCTACCTTAGCCACTCACTATTCAAAGTGTTGCTGGAAAAGGCTGCTGAGGAATTTGGGTTTGACCAGAGTGGCGGGCTCACGATCCCATGTGAGATTGAGACCTTTAAATACCTCCTTAAATGCATGGAGAACCAGCAGACAGAGCACCATGATGATGACAGCTTATGTGGAAACTCAGAAAGTTGGGAAGAGTAA 486 0.4424 MEHGGGSKLTGIWQIVRLKEMLQKWQIVTLGSKASHVKYVATDGSRSPIINKRITNVMSCDSDEDSCQSPEPPPDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAAEEFGFDQSGGLTIPCEIETFKYLLKCMENQQTEHHDDDSLCGNSESWEE* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01887 161 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 59 135 IPR003676 GO:0009733
Rops11g01887 161 Pfam Auxin responsive protein 59 138 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01887 Rops-Chr11 30523081 30525685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01887 1 151 Calmodulin-binding Proteins AT5G20810 69.481 2.31e-73 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01887 K14488 - vra:106767875 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01887 11 30523081 30525685 Rops11g01887 11 30523081 30525685 ECH
Rops2g05099 2 91448756 91449638 Rops11g01887 11 30523081 30525685 PCT