Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01874 ATGGAAGTGAAGCCTCTGTCTCTGCAATTTCTTCTTTTTCTGCCTTTACTTGCTCTTCCTGGATTCGCTTCCAATGCGACACTTAATGAGACTTGTGATGGTTCTCTCCATAGAAACGCTCATGATACGAAATGTAACCATATGCACTGCCACAGGGAATACCTTATAATCCTTGCGGTAGTGAGTGGATTGATACTCTCGACAACATTAGCAGTGGTAGTTTGGCTTCTTGTATATAAGCGGGGCAAGAAGAGAAGACGGTCTAGAAAACTGTCAGATCCAGCAGCTTCTCTTCCATCATGGAAAGTCTTCACCAAAGAGGAATTAAGGTCAATTACAAAGAATTTCAGTGAAGGTAACCGTCTAGTTGGGGATACCAAGACTGGTGGTACATACAGTGGGGTCCAACTGGATGGCTCAAAGGTTGCAGTTAAGAGATTAAAGAGGTCAAGCTTTCAGAGGAAAAAGGAGTTCTATTCTGAAATTGGCAGGGTTGCAAGGCTTCGTCATCCAAATCTGGTAGCTGTGATGGGATGCTGCTATGATCATGGTGACCGCTACATTGTTTATGAGTTTGTAGCTAATGGGCCCTTAGATAAATGGCTACATCACATACCAAGGGGAGGTCGCAGCTTAGATTGGGCTATGAGGATGAAAATTGCAACAACACTTGCTCAAGGGATTGCGTTTCTGCATGACAAGGTTAAGCCACAAGTCGTGCATCGAGATATACGTGCTAGTAACGTACTGCTGGATGAGGAGTTTGGAGCACACCTTATGGGTGTTGGTCTGTCCAAGTTTGTGCCATATGAAGTGATGCACGAGAGAACCGTGATGGCTGGTGGAACTTATGGATATCTTGCTCCAGAATTTGTGTACAGAAACGAGCTTACAACAAAGAGTGATGTCTATAGTTTTGGTGTCCTTCTACTTGAAATAGTCAGTGGACGAAGACCTGCACAGGCAGTTGATTCTGTGGGTTGGCAGAGTATATTTGAATGGGCTACACCTCTTGTTCAAGCTCATCGCTACCCTGAACTCTTGGATCCTCATATATCTTCCTCATCTTCCAGTATCATCCCAGAGTCTAGTACCATTCAGAAGGTGGTTGACCTTGTTTATTCATGCACACAACATGTCCCTTCTATGCGCCCTAGAATGTCTCATGTTGTTCATCAGCTGCAACAGATTGCTCAGCCACCTGAAAAATAA 1212 0.4422 MEVKPLSLQFLLFLPLLALPGFASNATLNETCDGSLHRNAHDTKCNHMHCHREYLIILAVVSGLILSTTLAVVVWLLVYKRGKKRRRSRKLSDPAASLPSWKVFTKEELRSITKNFSEGNRLVGDTKTGGTYSGVQLDGSKVAVKRLKRSSFQRKKEFYSEIGRVARLRHPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYPELLDPHISSSSSSIIPESSTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQIAQPPEK* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01874 403 Pfam Protein tyrosine and serine/threonine kinase 137 394 IPR001245 GO:0004672|GO:0006468
Rops11g01874 403 ProSiteProfiles Protein kinase domain profile. 117 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01874 403 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 55 398 - -
Rops11g01874 403 SMART tyrkin_6 64 394 IPR020635 GO:0004713|GO:0006468
Rops11g01874 403 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 193 403 - -
Rops11g01874 403 Gene3D Transferase(Phosphotransferase) domain 1 193 402 - -
Rops11g01874 403 SUPERFAMILY Protein kinase-like (PK-like) 90 396 IPR011009 -
Rops11g01874 403 ProSitePatterns Tyrosine protein kinases specific active-site signature. 239 251 IPR008266 GO:0004672|GO:0006468
Rops11g01874 403 Gene3D Phosphorylase Kinase; domain 1 92 192 - -
Rops11g01874 403 FunFam C-type lectin receptor-like tyrosine-protein kinase 94 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01874 Rops-Chr11 30253341 30258384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01874 23 402 Receptor kinase-like Gene Family AT1G52310 75.000 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Rops11g01874 PK_Tyr_Ser-Thr 6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01874 - - vra:106762676 669.848