Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01872 ATGGGGACTAAGAAGAAAAGTACCCAAGTGGTGGAAAATAAAAAGAATGAGAAGAAGGGTGTTGGCAATGGCAACAAAAATGAAAGTAAAGGAGATAATAGTGTTTTTGCTTCTTGCTCCTTCTCTAGCCTTGGTCTTCACTCCGCCTTATGTGACCAACTTCGTGAAAGGTTGAGCTTTGAAGTTCCAACGTTGGTGCAAGCTGAAGCCATTCCTGTCATTCTCTCCGGGCGTCATGCACTGGTTAATGCTGCCACTGGCACGGGGAAGACTATTGCGTACCTAGCACCAATTATTCATCACTTGCAGAATTATGATAATAGAATCCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGCGAGCTATGCTTGCAGGTTTATGAAATTCTTCAGAAGTTATTGCACCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCCAGACTGCGCAAAGGCATATCGATTCTTATAGCAACACCTGGGCGCCTTTTGGATCACTTGAAGAATACATCATCATTCATTTACACAAATTTGCGCTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAAGATATACAGGAAATATTAGATCTTTTAGGTTCAAGGAAAACAGGGTATGATGACCAAGAGAATGGAGGTCCAACACCCTCTAAAATTCAAAGACAGAATTTGCTTTTGTCGGCCACCTTAAATGAGAAAGTAAACCACCTTGCTAAAATTAGTCTAGACAATCCGGTGATGATTGGTCTTGATGGTAAAAGAACAGAACCAATTTCAACAATTAAAAGCCTTGATCATTCAGAATCTGATGATGACAATGAAGACAAGTATTCTAGTAAAATACCAACAGTCGGAGATTATAAAATCCCTGAACAGTTGATTCAGAGATACTTGAAAGTGCCTTGTGGTTCTCGGCTTCCTATACTTCTTTCAATTCTAAAGCATCTTTTTGAAAGGGAACTTTCTCAAAAGGTTGTGGTATTCTTTTCAACATGTGATGCAGTAGACTTTCATTATTCACTTTTAAGTGAATTTCAATTCTCATCCTATCCACAAACTGAAGAAGGGATCAAAAAGAAGTTTCTTGAATGCAAAACTTTTCGGTTACATGGTAATATGGAACAGGATGATCGGACAAAAAGTTTTCAGGCCTTTAAAACTGAGAAATCTGCTCTGCTTTTGTCCACTGATGTTTCTGCTAGAGGCCTGGATTTTCCAAAGGTTAGATGCATCATACAATATGATTCTCCCGGGGAAGCTACTGAATATGTGCACAGAGTTGGTAGAACTGCTCGGCTTGGAGAAAAAGGAGTGTCATTGTTATTTCTGCAACCAGTTGAAATAGACTATTTACAGGACTTGGAGAAACATGGTGTCTCACTAACAGAGTATCCTCTCCTCAAAGTGTTGGATAATTTCCCATATGGACAAAAGAACTTCAAGAAATCTGCTTTCATAGAATCACATCCCTGGGTTCTCTGTCTCCAGAAGGCACTTGAATCCTTCATCACGTCCAAGCCTAAGGTGGATGAACTTGCTAGGAGGGCATTTTGCACTTGGGTCCGTGCATACACAGCCCATCGCGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCATGTAGCAAAAAGCTTTGCACTGAAACAACAACCCTCCTTAGTTGGACAGTCATTCCAAAAGCAAACTAAGAAGAGAAAGAGATTTGAGAAGAACAATGGGCTTTCAAAAAAGAGAAAAGTTGCAAGGGTGACGTGA 1824 0.4019 MGTKKKSTQVVENKKNEKKGVGNGNKNESKGDNSVFASCSFSSLGLHSALCDQLRERLSFEVPTLVQAEAIPVILSGRHALVNAATGTGKTIAYLAPIIHHLQNYDNRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTSSFIYTNLRWIIFDEADRILELGFGKDIQEILDLLGSRKTGYDDQENGGPTPSKIQRQNLLLSATLNEKVNHLAKISLDNPVMIGLDGKRTEPISTIKSLDHSESDDDNEDKYSSKIPTVGDYKIPEQLIQRYLKVPCGSRLPILLSILKHLFERELSQKVVVFFSTCDAVDFHYSLLSEFQFSSYPQTEEGIKKKFLECKTFRLHGNMEQDDRTKSFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGEKGVSLLFLQPVEIDYLQDLEKHGVSLTEYPLLKVLDNFPYGQKNFKKSAFIESHPWVLCLQKALESFITSKPKVDELARRAFCTWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQTKKRKRFEKNNGLSKKRKVARVT* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01872 607 Gene3D - 323 603 IPR027417 -
Rops11g01872 607 CDD SF2_C_DEAD 312 462 - -
Rops11g01872 607 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 195 203 IPR000629 -
Rops11g01872 607 MobiDBLite consensus disorder prediction 588 607 - -
Rops11g01872 607 PANTHER RNA HELICASE 17 579 - -
Rops11g01872 607 SMART helicmild6 370 453 IPR001650 -
Rops11g01872 607 Pfam Domain of unknown function (DUF4217) 515 575 IPR025313 -
Rops11g01872 607 Pfam Helicase conserved C-terminal domain 330 453 IPR001650 -
Rops11g01872 607 SMART DUF4217_3 513 578 IPR025313 -
Rops11g01872 607 MobiDBLite consensus disorder prediction 1 29 - -
Rops11g01872 607 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 39 68 IPR014014 GO:0003724
Rops11g01872 607 MobiDBLite consensus disorder prediction 8 25 - -
Rops11g01872 607 Gene3D - 2 270 IPR027417 -
Rops11g01872 607 SMART ultradead3 59 280 IPR014001 -
Rops11g01872 607 Pfam DEAD/DEAH box helicase 65 255 IPR011545 GO:0003676|GO:0005524
Rops11g01872 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 474 IPR027417 -
Rops11g01872 607 FunFam RNA helicase 2 269 - -
Rops11g01872 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 267 IPR014001 -
Rops11g01872 607 CDD DEADc_DDX31 50 268 - -
Rops11g01872 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 500 IPR001650 -
Rops11g01872 607 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01872 Rops-Chr11 30238128 30249132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01872 60 484 Eukaryotic Initiation Factors Gene Family AT1G72730 25.761 4.02e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01872 K14806 - gmx:100805157 1013.45