Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01871 ATGAAGGCTCCTTCCAATGGTTACTTGCCTAATTCTGGCGAAGGTGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCGTTGGTTTCATTACCACCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCAGCATCTATGCAAAAGGAGGCCGACATCATACCCAGTTACCCTAACCTTCCCTCCAAGTTGATTTGCATGCTTCACAATGTTGTCCTGCATGCTGATCCTGAAACTGACGAGGTCTATGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAAGAAGCAATGCTGGCATCAGACATGGGTCTCAAACAAAACCAACAACCTACTGAATTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCACCTCTGGATTTTTCATTGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTACATGACAGCACATGGACATTTAGACATATTTATCGTGGACAACCAAAGAGACATCTATTGACTAGTGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTGTTTGCTGGAGATTCTGTTCTTGTTATCAGAGATGAAAAACAGCAACTTCTTTTAGGTATAAAGCGAGCAAATAGACAGCAGCCAGCACTATCTTCGTCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCATTTACTATATTTTATAATCCAAGGACCAGCCCCTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAATCCATGTACACTCAAGTTTCTCTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAGTCAGGAGTACGCAGATATATGGGTACTATCACTGGGATCAGTGACTTGGATCCTGTCAGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTTTCAATTTGGGATATTGAACCAGTGGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAAGCAACCGGGAATGCCAGAAGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCGTGGCTTGGAGATGACCTTGGCATGAAGGATGCCTCAAATTCAATCTTTCCTGGTTTGAGTTTAGCTCAATGGATGAGCATGCAGCAGAATAATCAATTCTCTGCTGCACAATCAGGGCTTTTACATCCTTCCATGCTTTCATCTAATACACTGCATGGTAACTTAAACACTGATGATCCATCCAAGTTATTGAGCTTTCAACCCCCTGTCCTCTCTGCACCAAATCTTCAATTTAACAAACCTAACTTACCAAACCAAGTCAACCAATTGCAACAGTCCCCAACATCATGGCCTCAGCAGCAGCAGCAGCAGCAGCAACAGAAGCTGCAGTCATTGTTGCAATCACCATTAAACCAACTCCAGCAGCAGCAGCAGCATAGGCAACAACAGCTGCCTGGACCACAAAACCTGCCACAGCCACAACAACAACCACCCCAACTACCTCAACAAAGAGCACAGCAGCCACAACAACAGCAACAGTTGTGTCAAAATACCATTATGAATAATGGGGCAGTTGCTTCTAGCCATATTCCAAATCAGTGTGTACAGCAACCAGTGACCTATTCTCAGCTTCAGCAACACCAATTACACTCGGGAAATATCCCACCCCAACAAAGTTTCCAATCAGTTGGTAAGAACACATTGCTAATGACATCCTTGCCCCAAGACACACAATTTCAGCTACAGACAGACCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCAGCAACAGCCACAGTTGCAACAATCTCCATTGCAGTTATTGCAACAAAGTCTGTCACAAAGGGCAACACAGCAACCACAAGTGACTCAAATGTCACCTCAAAACACCTCAGAGCAACAACCACAATTGCAGCTGCTGCAGAAGTTGCAGCAGCAACAGCAACAGCAACAGCAGCCGCAGCAACAGCAACTCCTTTCCACATCTAGCTCGAATCTCCAGGCTCAGCTCCTGCAACAACAAAATACTCACCAACAAAACCAGCAACTACCACAGCTGCCTCTGTCACAGCAACATCAGCCTCAACAGCTAGGCAACAATGCATTCTCAATGGAGAAGCTTCTCAACAACAACTTCTCTTCAGCTCTGATGCAATCACAGCAGCTTCCTGTGAACCAATCCCAGAATACACAGAAATCACTAACTAATACTAGAGCTCCCTCTACTCTTACAGATGGAGATGCCCCATCATGCTCAACTTCACCATCTACTAATAACTTCCAGATATCTCCTCCGAACCTCCTGAAAAGAAATCAACAAGTAGCAGTCACATCATTGGGGCCTTCAGTAGTTGAATCCACCAATAATCTGATGCAGGAGCTTCAGACTAAGTCTGACATGCAGATCAAACATGAATTGCCAAGTGTAAAAGGACCTGACAAGCTAAAGTATAAAGGGACAATTACTGATCAGATGGAAACTTCTTCTGGAACATCTTACTGTATTGATCTTGGTAGTATTCACCAGAACTTCCAACTTCCCAACTTCTGTATGGATGGGGATGTCCAATCACACTCTAGAAATAATCTACCATTTGCCTCTAATCTTGATGGATTAACTCCTAGAAATAATCTACCATTTGCCTCTAATCTTGATGGATTAACTCCTGATACTTTGCTCTCAAGAGGGTATGATGATCAAAAAGATCTTCAAAACTTGCTGTCTACTTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATTAGTTCACAGTCATTTGGGGTGCCAAACATGCCTTTTAAACCGGGATGCTCAAATGATATAGCCATCAATGATACTGGGGTTTTGAATAATGGCTTGTGGGCTAATCAAACTCAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGTTACAAGGGATATGAAGAACTCCGGCATGATTTGGCTCGTATGTTTGGGATTGAAGGGCAACTAGAAGATCCTCAAAGGACTGAGTGGAAACTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCATGGGAAGAATTTGTGAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAACAACTGAGCTTGGATGGAGATTTGGGTAATGTTCCAATTCCCAATCAAGCTTGCAGTGGGACAGAAAGTGGCAATGCATGGAGGGCACAGTATGATGATAACTCTGCAGCCTCATTCAATCGATAA 3411 0.4359 MKAPSNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADIIPSYPNLPSKLICMLHNVVLHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSLQPPAQEIVAKDLHDSTWTFRHIYRGQPKRHLLTSGWSVFVSTKRLFAGDSVLVIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPSEFVIPLAKYNKSMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESDIENAFKRAMPWLGDDLGMKDASNSIFPGLSLAQWMSMQQNNQFSAAQSGLLHPSMLSSNTLHGNLNTDDPSKLLSFQPPVLSAPNLQFNKPNLPNQVNQLQQSPTSWPQQQQQQQQQKLQSLLQSPLNQLQQQQQHRQQQLPGPQNLPQPQQQPPQLPQQRAQQPQQQQQLCQNTIMNNGAVASSHIPNQCVQQPVTYSQLQQHQLHSGNIPPQQSFQSVGKNTLLMTSLPQDTQFQLQTDQQASLLQRQQQQQPQLQQSPLQLLQQSLSQRATQQPQVTQMSPQNTSEQQPQLQLLQKLQQQQQQQQQPQQQQLLSTSSSNLQAQLLQQQNTHQQNQQLPQLPLSQQHQPQQLGNNAFSMEKLLNNNFSSALMQSQQLPVNQSQNTQKSLTNTRAPSTLTDGDAPSCSTSPSTNNFQISPPNLLKRNQQVAVTSLGPSVVESTNNLMQELQTKSDMQIKHELPSVKGPDKLKYKGTITDQMETSSGTSYCIDLGSIHQNFQLPNFCMDGDVQSHSRNNLPFASNLDGLTPRNNLPFASNLDGLTPDTLLSRGYDDQKDLQNLLSTYGGAPRDIETELSTAAISSQSFGVPNMPFKPGCSNDIAINDTGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYEELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQLSLDGDLGNVPIPNQACSGTESGNAWRAQYDDNSAASFNR* 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01871 1136 MobiDBLite consensus disorder prediction 714 736 - -
Rops11g01871 1136 FunFam Auxin response factor 289 361 - -
Rops11g01871 1136 ProSiteProfiles PB1 domain profile. 1009 1102 IPR000270 GO:0005515
Rops11g01871 1136 MobiDBLite consensus disorder prediction 469 531 - -
Rops11g01871 1136 MobiDBLite consensus disorder prediction 762 806 - -
Rops11g01871 1136 SUPERFAMILY CAD & PB1 domains 1023 1087 - -
Rops11g01871 1136 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 1098 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops11g01871 1136 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops11g01871 1136 SMART B3_2 126 228 IPR003340 GO:0003677
Rops11g01871 1136 MobiDBLite consensus disorder prediction 469 555 - -
Rops11g01871 1136 FunFam Auxin response factor 124 228 - -
Rops11g01871 1136 Gene3D - 1004 1098 - -
Rops11g01871 1136 CDD B3_DNA 125 217 IPR003340 GO:0003677
Rops11g01871 1136 MobiDBLite consensus disorder prediction 653 681 - -
Rops11g01871 1136 Pfam AUX/IAA family 1006 1097 IPR033389 -
Rops11g01871 1136 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Rops11g01871 1136 MobiDBLite consensus disorder prediction 541 555 - -
Rops11g01871 1136 FunFam Auxin response factor 1004 1098 - -
Rops11g01871 1136 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Rops11g01871 1136 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Rops11g01871 1136 Gene3D - 123 227 IPR015300 -
Rops11g01871 1136 Gene3D - 289 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01871 Rops-Chr11 30197618 30206175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01871 1 488 B3 DNA Binding Superfamily AT1G19220 81.967 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops11g01871 AUX_IAA 1.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01871 K14486 - gmx:100804628 904.82