Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01866 ATGGTGAAGCCCAGCGTTGAGAAACCTGCGATGGAGAAAAGTGATTCCTTGTACCGTGGAGTGAGAAAGAGGAAATGGGGCAAATATGTGTCGGAAATAAGATTACCCAACAGCCGTCAAAGGATATGGTTAGGTTCCTACGACACAGCCGAAAAGGCGGCGCGTGCATTCGACGCCGCCATGTTTTGCTTACGTGGCAATTCTGGAAGGTTTAACTTCCCCGGTGACTTGCCGGAAATTTCTGGCGGAAGGTCCATGACCCCTTCTCAGATTCAAGCAGCTGCAGCACGTTTTGCTTATTCGGAGCCCCGAAATGAGGTCCGACCCGTTACCACTCCAGTGGAATCTTCATCTTCTTCGGAGGGTACGTTGTTGTTGCCTATGGAGCCACCGTCTCCTGCTCTCTCAGAAGTGACAGTTCAGACGGAGAGTGAAGTCACAACAAACGGGTCGTTTCCGGATTTGTTTTCGGTGATCGGGTCGGGTATTTATGAACCCGATTACCCTGTTTTTCCGTGTTTTGATGATTTTAGCAGCGATTTCTACGTGCCGGAGCTGCCAAGTTTTGATATTGGAGAAGAGAACATAGATGGGTTGATGATTCAGGACTCGTTCTTGTGGAATTTCTAA 630 0.4889 MVKPSVEKPAMEKSDSLYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDTAEKAARAFDAAMFCLRGNSGRFNFPGDLPEISGGRSMTPSQIQAAAARFAYSEPRNEVRPVTTPVESSSSSEGTLLLPMEPPSPALSEVTVQTESEVTTNGSFPDLFSVIGSGIYEPDYPVFPCFDDFSSDFYVPELPSFDIGEENIDGLMIQDSFLWNF* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01866 209 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Rops11g01866 209 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Rops11g01866 209 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Rops11g01866 209 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Rops11g01866 209 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Rops11g01866 209 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Rops11g01866 209 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Rops11g01866 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 120 - -
Rops11g01866 209 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Rops11g01866 209 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01866 Rops-Chr11 30118340 30119372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01866 16 209 AP2-EREBP Transcription Factor Family AT1G19210 46.305 4.04e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops11g01866 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01866 - - gmx:100802508 258.455