Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01860 ATGGCCGCTGTTCGCGTCCATCACCATCACAACAACTACCACCTTCTTATCTTCCTCCTCTCTCTTTCTCTTTCCCTCCCTCTCTCTTCTCCATCAGAAACCCAATCCCTCCTCAAGCTCAAACAGTCCTTCACCAACGCCGACCAATCCTTAGCTTCATGGATCCCAAACGTGTCCCCTTGCTCTGGAACTTGGGTCGGTGTCATTTGTTTCAACAATATCATCACCGGCCTCCACCTCTCCGATCTCAACCTCTCCGGCAACATCAATGTCGATGCTCTCGCCGAGATTCGTGGCCTCCGAACCCTCAGCTTCATAAACAACTCCTTCTCAGGTTCCATTCCAGAATTCAACAAACTCGGCACCATCAAATCCCTGTTACTCACTCACAATCAATTCTCCGGTCCCATCCCACAAGATTTCTTCTCCCATCTATCTTCCTTGAAGAAAGTTTGGCTCTCCGGTAACAAATTCTCCGGCAACATCCCCAACTCTTTAGCAGAACTTGACCTCCTTATGGAATTGCACCTTGAATACAACGAGTTCTCTGGTCCCATCCCGAACCTTAAACAAAACATAAGATCATTCGACGTGTCGAACAACAAGTTAGAAGGACCGATCCCGGAAAGCTTGTCAAGATTCGGCACGTCGTCGTTCTCAGGAAATGAAGGTCTATGTGGGAAGCCGTTAAACAAGGCTTGTAATAGTGGCAATGATGACAGTGACAGTTATTCTTATTCCTCTCTTCCTAAAATAGGAAGCGGTTACGGTTCTGGTTGGGCGGTTAAGGTGATTGTTATAATGGCCTTGGCAGTTATAGCAGCGGTTATTTTTCTGTTCGTGAAATCACGGCAACGGCGTGATGATGATTTTAGTGTTGTGAGTAGGAACAGTAGCACGGATGAGGTGGTGCAAGTGCACGTGCCAGTGCAAGTGCCAAGTAATAAATCAGAAACGGTTGGGAGAAAGGGTGGTGGAGAATCAAAGAAAGGGGGTTCAAGAAGTATTGGGGATATTGTGATGGTGAATGAGGAGAAGGGGGTGTTTGGATTGCAGGATTTGATGAAGGCTGCGGCTGAGGTTCTTGGGAATGGAGGGTTGGGTTCGGCTTATAAAGCTGCCATGGCTAATGGGTTGTGTGTGGTGGTGAAGAGGATGAGGGAGATGAATAAAATTGGGAGGGATGTGTTTGATGCTGAGATGAGACAGTTTGGGAGGATGAGACATAAGAATATTTTGACACCTTTGGCTTACCATTATCGTAAAGAGGAGAAGCTCTTTGTCACTGAGTACATGCCCAAAGGAAGCTTGTTATATGTCTTGCACGGTGATAGAGGAACAAGCCATTCTGAACTGAGTTGGCCTACCCGTTTGAAGATTGTTAAGGGAATAGCAAGAGGGTTAGGCTTCCTTTACACTGAATTTTCTACCTATGACCTTCCCCATGGAAACCTCAAGTCTAGCAATGTTCTACTAACTGATGATTATGAGCCTCTCTTAAGTGACTATGCTTTTCACCCACTTATCAACCCCAGTGTTGCAGTGCAAGCAATGTTTGCCTACAAAACCCCAGATTACTTGCAAAGGCAGAAAGTTTCACAGAAAACTGATGTTTATTGCCTTGGAATCATCATTCTTGAAATAGTTACTGGGAAATTCCCTTCTCAGTATCACAGCAATGGAAAGGGTGGGACTGATGTAGTGCAATGGGTCCTCACAGCAATTTCTGAGAGAAGAGAAGCAGAATTGATTGATCCAGAGTTACAAAACAACTCAGAATCACACAATCAGATGCTGCAACTTCTCCAAGTTGGGGCTGCTTGCACAGATAGCAACCCTGAACAAAGACTAAACATGAAGGAAGCTATTAGAAGGATAGAGGAGGTACAAGTTTGA 1896 0.4541 MAAVRVHHHHNNYHLLIFLLSLSLSLPLSSPSETQSLLKLKQSFTNADQSLASWIPNVSPCSGTWVGVICFNNIITGLHLSDLNLSGNINVDALAEIRGLRTLSFINNSFSGSIPEFNKLGTIKSLLLTHNQFSGPIPQDFFSHLSSLKKVWLSGNKFSGNIPNSLAELDLLMELHLEYNEFSGPIPNLKQNIRSFDVSNNKLEGPIPESLSRFGTSSFSGNEGLCGKPLNKACNSGNDDSDSYSYSSLPKIGSGYGSGWAVKVIVIMALAVIAAVIFLFVKSRQRRDDDFSVVSRNSSTDEVVQVHVPVQVPSNKSETVGRKGGGESKKGGSRSIGDIVMVNEEKGVFGLQDLMKAAAEVLGNGGLGSAYKAAMANGLCVVVKRMREMNKIGRDVFDAEMRQFGRMRHKNILTPLAYHYRKEEKLFVTEYMPKGSLLYVLHGDRGTSHSELSWPTRLKIVKGIARGLGFLYTEFSTYDLPHGNLKSSNVLLTDDYEPLLSDYAFHPLINPSVAVQAMFAYKTPDYLQRQKVSQKTDVYCLGIIILEIVTGKFPSQYHSNGKGGTDVVQWVLTAISERREAELIDPELQNNSESHNQMLQLLQVGAACTDSNPEQRLNMKEAIRRIEEVQV* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01860 631 CDD STKc_IRAK 362 628 - -
Rops11g01860 631 Gene3D Phosphorylase Kinase; domain 1 325 431 - -
Rops11g01860 631 Gene3D Ribonuclease Inhibitor 143 236 IPR032675 -
Rops11g01860 631 FunFam Pollen receptor-like kinase 1 432 631 - -
Rops11g01860 631 FunFam Nuclear pore complex protein NUP107 30 188 - -
Rops11g01860 631 Pfam Protein kinase domain 360 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01860 631 Gene3D Ribonuclease Inhibitor 32 142 IPR032675 -
Rops11g01860 631 ProSiteProfiles Protein kinase domain profile. 356 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01860 631 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Rops11g01860 631 SUPERFAMILY L domain-like 30 219 - -
Rops11g01860 631 Gene3D Transferase(Phosphotransferase) domain 1 432 631 - -
Rops11g01860 631 Pfam Leucine rich repeat 123 181 IPR001611 GO:0005515
Rops11g01860 631 MobiDBLite consensus disorder prediction 314 333 - -
Rops11g01860 631 SUPERFAMILY Protein kinase-like (PK-like) 360 626 IPR011009 -
Rops11g01860 631 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 630 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01860 Rops-Chr11 29991190 29994300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01860 15 631 Receptor kinase-like Gene Family AT3G42880 50.157 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops11g01860 Pkinase 2.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01860 - - gmx:100790660 851.277