Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01839 ATGACCATCATGAAAGCCATATGGAAATCAATCTTCCCTGGTTGTTATAAGGGAGGGTATCCCTCACCAAAGCCAAAGAAAGTGGTGTCTACAAAGCCAAGTTCATCTCTTAGGATTTCTGTAACGGATTTGAGTTATCCCAACACGACTCTTTCTGAGGATCTCTCTATTTCTCTAGCAGGATCTAACCTGCATGTTTTGACAGTTGCTGAGCTCAAGGTTATCACACAGCACTTCTCTTCAAGTAATTTTATAGGAGAAGGTGGATTTGGACCAGTGCATAAGGGGTTCATTGATGACAAGCTTAGGCCTGGTCTTAAGGCTCAACCAGTGGCTGTTAAGCTCTTGGATTTGGATGGCACACAGGGCCATAAAGAGTGGCTGACTGAAGTTGTTTTTCTGGGGCAACTGAGACATCCACACCTTGTGAAGCTAATTGGATATTGCTGTGAAGATGAACACAGGCTTCTGGTGTATGAGTATTTACCAAGAGGAAGTTTAGAGCATCAATTATTTAGAAGATACTCAGGATCACTACCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCGGCAAAGGGTTTAGCCTTTCTTCATGAAGCAGAGAAACCAGTCATCTATAGAGATTTCAAAGCTTCAAACATCTTGTTAGACTCTGATTATAATGCAAAACTCTCTGACTTTGGGTTGGCAAAAGACGGTCCTGAAGGAGATGACACCCACGTTTCAACCCGTGTTATGGGCACCCACGGTTACGCCGCCCCAGAATATATCATGACAGGTCACTTGACAGCGATGAGTGACGTGTATAGTTTTGGAGTAGTCCTTTTGGAGCTATTAACAGGGAGAAGGTCAGTGGACAAAAATCGCCCTCCAAGGGAGCAGAACTTAGTTGACTGGGCAAGACCCATGTTACTTGATTCAAGGAAACTTAGTAGGATAATGGATCCTAGACTTGAAGGGCAATATTCTGAGATGGGGACTAAAAAAGCAGCAGCATTGGCTTATCAATGTCTTAGCCATAGGCCAAAGAGTAGGCCTACAATGAGTGCAGTTGTCAAGACTCTAGAGCCACTCCAAGATTTTGATGATATTCCGATAGGACCCTTTGTTTACACAGTTCCACCTGATAATGAAGTGCATAAGGATTATGAAACATCTAAGGAGAGAAGAAGGGAAAATGGTCACCATCACAGGAATCACCATCACAAAAATGGACGTCGGCATCATCCACTTAAATCACCCAAGTCGCCAAATCCACAATCACAGTCACGTTCACAGAATGATAGACACCGAAATGGAAGAGGAAGTGGGTCACATTCTCCTCCATAA 1332 0.4339 MTIMKAIWKSIFPGCYKGGYPSPKPKKVVSTKPSSSLRISVTDLSYPNTTLSEDLSISLAGSNLHVLTVAELKVITQHFSSSNFIGEGGFGPVHKGFIDDKLRPGLKAQPVAVKLLDLDGTQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEDEHRLLVYEYLPRGSLEHQLFRRYSGSLPWSTRMKIAVGAAKGLAFLHEAEKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTHGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKNRPPREQNLVDWARPMLLDSRKLSRIMDPRLEGQYSEMGTKKAAALAYQCLSHRPKSRPTMSAVVKTLEPLQDFDDIPIGPFVYTVPPDNEVHKDYETSKERRRENGHHHRNHHHKNGRRHHPLKSPKSPNPQSQSRSQNDRHRNGRGSGSHSPP* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01839 443 FunFam Probable serine/threonine-protein kinase PBL8 162 370 - -
Rops11g01839 443 ProSiteProfiles Protein kinase domain profile. 79 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01839 443 PANTHER OS01G0588500 PROTEIN-RELATED 47 360 - -
Rops11g01839 443 CDD STKc_IRAK 85 359 - -
Rops11g01839 443 Gene3D Phosphorylase Kinase; domain 1 42 161 - -
Rops11g01839 443 FunFam Serine/threonine-protein kinase BIK1 47 161 - -
Rops11g01839 443 Pfam Protein tyrosine and serine/threonine kinase 83 356 IPR001245 GO:0004672|GO:0006468
Rops11g01839 443 MobiDBLite consensus disorder prediction 393 414 - -
Rops11g01839 443 Gene3D Transferase(Phosphotransferase) domain 1 162 365 - -
Rops11g01839 443 SUPERFAMILY Protein kinase-like (PK-like) 55 357 IPR011009 -
Rops11g01839 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Rops11g01839 443 MobiDBLite consensus disorder prediction 370 443 - -
Rops11g01839 443 MobiDBLite consensus disorder prediction 378 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01839 Rops-Chr11 29651300 29653645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01839 65 392 Glycoside Hydrolase AT3G07070 50.599 1.90e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops11g01839 PK_Tyr_Ser-Thr 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01839 - - gmx:100783759 722.62