Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01827 ATGATGAACGGAAGGAACAGGTTCCCCTTTACTCCATCACAGTGGCAAGAGCTTGAACATCAAGCTCTTATCTATAAGTACATGGCTTCAGGTATGTCCATCCCACCTGATCTTCTTTTCACCATCAGAAGAAGCTATTTGGATTCTCCTATGTCTTCAAGGCTTTTGCCTAATCAGCCACAACACCACTTTGGATGGAACTATCTGCAGATGGGTTTGGGAAGAAAAATAGACCCTGAGCCAGGTAGGTGTAGAAGAACAGATGGAAAGAAATGGAGGTGCTCAAAAGAGGCATACCCAGATTCTAAGTACTGTGAGAGACACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACTACAAACACAAATGCTCTTTCACCAGCAGCAATCTCATCAATCACTACAAATAGTCCAGCACTAACCCCAACAACTCATTCTATTTCACCTCTTACTTCTTCTGTTTCCTCTGAAACACACCATCACCACACTCAACATTCTAGCTATGGTTCCCATTTTCAGCACTCCTTTCTCTATCATCACCCACCATCAAGGTCATCTGGTATTGGTTTGCCATTTGAAGACAACAACAATGCTCCCTTGTTTCTTGACACTGGCTCTTGCTCTCAGACTAACTCAGACTGCAGGAATAGGTATGTTTATGGACAGAAAGAGGAGGTAGATGAACATGCTTTCTTCACAGAGCCTTCTGGTGTCATGAAAAGCTTCTCTGGTTCCTCTATGGATGATTCTTGGCAACTCACACCACTTACTATGAGTTCCTCATCTTCTTCTTCAAAACAGAGGAGTTGCTCTGGTTTGTCCAATGATTACTCTTACTTGCAACTTCAGAGCCTCAGTGACCATTCCAAACAGCAAGAGCAAGATCAAGGTTGCTACATATTAGGAGGTGAAATCAAGAGTGAGTCACTGATGAAACTGGGAAAAGAAGAACCTCAGAAAACTGTTCACCGTTTCTTTGATGAGTGGCCCCACAAAGGCAGAGGCTCATGGCTTGATTTGGATGATAAATCATCTACTACCCAACTATCAATTTCCATTCCCACCTCTGCTCATGATTTTTCAACCTTCAATTCCAGAACCCACCATGATGGTTGA 1140 0.4289 MMNGRNRFPFTPSQWQELEHQALIYKYMASGMSIPPDLLFTIRRSYLDSPMSSRLLPNQPQHHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTTNTNALSPAAISSITTNSPALTPTTHSISPLTSSVSSETHHHHTQHSSYGSHFQHSFLYHHPPSRSSGIGLPFEDNNNAPLFLDTGSCSQTNSDCRNRYVYGQKEEVDEHAFFTEPSGVMKSFSGSSMDDSWQLTPLTMSSSSSSSKQRSCSGLSNDYSYLQLQSLSDHSKQQEQDQGCYILGGEIKSESLMKLGKEEPQKTVHRFFDEWPHKGRGSWLDLDDKSSTTQLSISIPTSAHDFSTFNSRTHHDG* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01827 379 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops11g01827 379 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Rops11g01827 379 MobiDBLite consensus disorder prediction 134 175 - -
Rops11g01827 379 MobiDBLite consensus disorder prediction 134 165 - -
Rops11g01827 379 Pfam WRC 79 121 IPR014977 -
Rops11g01827 379 PANTHER GROWTH-REGULATING FACTOR 5 8 367 IPR031137 GO:0005634|GO:0006351|GO:0032502
Rops11g01827 379 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops11g01827 379 Pfam QLQ 9 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01827 Rops-Chr11 29456330 29458325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01827 7 121 GRF Transcription Factor Family AT3G13960 71.304 9.85e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Rops11g01827 WRC 8.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01827 - - gmx:100781613 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01827 11 29456330 29458325 Rops11g01827 11 29456330 29458325 ECH
Rops2g05143 2 92121886 92124016 Rops11g01827 11 29456330 29458325 PCT