Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01824 ATGGGTAGAAGCCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCCTGGACAGCTCAGGAAGACAAAATCCTCCTAACTTATGTTAATGTCCATGGCCCAGGAAAATGGAGGAACCTTCCTCAAAGAGCAGGTTTGAAACGTTGTGGTAAAAGCTGCAGACTTCGATGGTTGAATTATCTAAGACCAGATATTAAGAGAGGGAACATATCCCCAGATGAAGAAGAACTTATCATCAGACTTCACAAGCTCCTAGGAAACAAATGGTCTCTAATAGCTGGAAGACTTCCAGGCCGAACTGACAATGAGATAAAGAATTATTGGAACACCAATTTAGGTAAAAAAATTAAAGATGGTAACTCCAACACTTCATCTGGAAACACCAATGAAAAAAACCATCGGAAAACAAAGCCTCAATCATCCTCCAAGGTTGCTGCTCCATCATCTCTTGATATGTCTAAGCTAGATTCCAATGTGATCCGTACAAAGGCATCCAAGTGCTCCAAGGTTTTGTTCCTAGATCCACACCCTCACTCATCAACCCAACAACAGAACAATTTTGTAGCAGAAGAAGCAGAACCTTGTTTTGTGGAAGCTACAGCCAATAATTTAACCAGTAACAAAATGGAGACAAGTGTGTTCGATGATGGACTTGGGTCGTTTCCCAGTGATGAAAAGGTACACTCAACGGATTTGCTCTTGGATTTTGACATTGGGGAACTTTGCTTCCCTGATCTTCTTAACTTCAATGTCTCTGAGGTCTGCAATTTAAATTCCAACAACGACCAGGATCTATTGCCTTTTTCGGACCAACCTCTAGTGTCCCCTGAAATTCTCAAAAACAGGACACAGAAATATGTCAGTGACGGGGAGTATGATAATGAATGCTAA 891 0.4141 MGRSPCCSKEGLNRGAWTAQEDKILLTYVNVHGPGKWRNLPQRAGLKRCGKSCRLRWLNYLRPDIKRGNISPDEEELIIRLHKLLGNKWSLIAGRLPGRTDNEIKNYWNTNLGKKIKDGNSNTSSGNTNEKNHRKTKPQSSSKVAAPSSLDMSKLDSNVIRTKASKCSKVLFLDPHPHSSTQQQNNFVAEEAEPCFVEATANNLTSNKMETSVFDDGLGSFPSDEKVHSTDLLLDFDIGELCFPDLLNFNVSEVCNLNSNNDQDLLPFSDQPLVSPEILKNRTQKYVSDGEYDNEC* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01824 296 SMART sant 66 114 IPR001005 -
Rops11g01824 296 SMART sant 13 63 IPR001005 -
Rops11g01824 296 CDD SANT 16 61 IPR001005 -
Rops11g01824 296 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops11g01824 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops11g01824 296 MobiDBLite consensus disorder prediction 112 149 - -
Rops11g01824 296 FunFam MYB-related transcription factor 13 66 - -
Rops11g01824 296 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops11g01824 296 FunFam Transcription factor TT2 70 141 - -
Rops11g01824 296 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 197 - -
Rops11g01824 296 Gene3D - 71 144 - -
Rops11g01824 296 MobiDBLite consensus disorder prediction 112 129 - -
Rops11g01824 296 CDD SANT 71 112 IPR001005 -
Rops11g01824 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops11g01824 296 Gene3D - 14 66 - -
Rops11g01824 296 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops11g01824 296 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops11g01824 296 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01824 Rops-Chr11 29371641 29372791 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01824 1 170 MYB Transcription Factor Family AT4G38620 55.294 1.70e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops11g01824 Myb_DNA-binding 6.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01824 K09422 - gmx:100802704 346.665