Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01821 ATGGAAAGCGAGGCCCGTTGTGAAAAACATGGGATGGAAAGAGATGCTTGGTCTTCTGAGGAAGATGAAATCCTTATGAACTACGTTCAAGTCAATGGAGAAGGAAATTGGAGAGACCTTCCCAAAAGAGCTGGTTTGAACCGATGCGGTAAGAGTTGCAAACTCCGATGGTTGAATTATCTCAAGCCAGGGATCAACAATAGAGGGAACATTTCTTCGGATGAAGAAGATCTCATAATCAGATTACATAAGCTCTTGGGGAATAGCAGCACTTAG 276 0.4312 MESEARCEKHGMERDAWSSEEDEILMNYVQVNGEGNWRDLPKRAGLNRCGKSCKLRWLNYLKPGINNRGNISSDEEDLIIRLHKLLGNSST* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01821 91 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops11g01821 91 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 88 - -
Rops11g01821 91 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops11g01821 91 CDD SANT 16 61 IPR001005 -
Rops11g01821 91 FunFam MYB-related transcription factor 13 66 - -
Rops11g01821 91 SUPERFAMILY Homeodomain-like 16 89 IPR009057 -
Rops11g01821 91 Gene3D - 14 66 - -
Rops11g01821 91 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 65 IPR017930 -
Rops11g01821 91 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01821 Rops-Chr11 29325608 29326195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01821 7 88 MYB Transcription Factor Family AT3G13540 65.854 9.97e-36 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops11g01821 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01821 K09422 - gmx:100780809 135.961