Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01818 ATGTCGGTGAATCTGACGGCGAATGCGATTCCTGCGATAGTCGGCGGCGACGTGAACGCGAAGCCGTTGGTTCAGGTTCTGGATATTGCGTTAATCTCTAATAGCAATAACTCGAAGCAGCAGAGATACCGTCTTGTGCTATCCGACGCCGTTTCGTGTCACCAAGCCATGCTCGCCGCTCAGCTCAATGACCGAGTCCAAACCGGACGAGTTAAGAAAGGTTCCGTCGTTCAGCTTATCGACTATATATGCAGCCCTCTCCATAACCGCAAGATTATTGTGGTGCTCAACATGGAAACTATAATACCTGATTGTGAGATCATTGGGAATCCGAAGTCATTTGGGGATTCTGATGTACCAATTCAGAGGGCATTGCATGATAACAATGTGGAGAATTCATCTAGAAAAAGTAATAATAATTTGACTGCTCAAAATGCAAGTCAGAATGTGCAGAATTTCAGGCCAACAGTTCAACCTCCATACCAGCCACCTCCGGTTTACAAAAGCCGTGGTGCAATTGTGAAAAATGAGGCACCAGCACGCATCATTCCTATAGCTTCTTTAAATCCTTATCAAGGTAGGTGGGCTATCAAGGCAAGGGTAACTGCTAAAGGAGATCTCCGTAGGTATAATAATGCTCGTGGAGATGGGAAAGTCTTCTCATTTGATCTCCTTGATTCTGATGGGGGGGAAATACGAGTAACCTGCTTTAATGCTGTTGTTGATCGCTTCTATGATGCAATTGAGGTTGGTAAAGTTTACATGATATCCAAAGGTAGCTTGAAACCTGCACAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTGTTTTGGATTCAAATTCCACAGTTGAGCTTTGCCCAGATGAGGATGGTTCTATACCTAGACAGCAGTTCTCCTTCAGGCCTATTAGTGACATTGAGAATCTTGACAGTAACTCCATCCTTGATGTTATTGGGGTAGTGACATCTGTGAATCCTTCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAGAGAAGAATTTTGAATCTAAAAGACAGTTCTGGCAGGAGTGTTGAGCTAACACTTTGGGGCGAATTCTGCAACAGGGAAGGACAAAAGCTGCAAGAGATGGTGGATGCTGGGGATTTCCCCATTTTGGCAGTCAAAGCTGGAAAGGTTAGTGACTTTAGTGGAAAGTCTATAGGCTCTATTTCTACGACACAGCTTTTCATAAATCCAGATTTCGCTGAGGCACATAGCTTAAGAGACTGGTTCGATCGAGTGGGAAAAGATTCTGCTTCCCTATCCATTTCTAAGGACATTATTCCTGGAGGAGCAAAGAATGAGATACGCAAAACTGTGTCTCAGATCAAAGATGAAGGTCTGGGGCGGTCAGACAAGCCAGACTGGATAACAGTGAAGGCAACCATATCATTCATGAAGACCGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACAGTGCAATAAGAAAGTGACTAGGTCAGGAGACACAAGATGGCAATGTGATAGATGCAACCAAGAGTTTGAGGAGTGTGATTACCGATACCTTCTCCAAGCTCAAATCCTGGATCACACAGGATTAACTTGGGTAACTGCTTTCCAGGAAGCAGGGGAAGAGATCATGGGGTGCTCTGCAAAGGAGCTGTACTTGTTGAAGTATGAACACCAGGATGATGAGAGGTTTGGAGAAATAATCAAGAGTAGACTCTTCAACCAGTTTATATTCAGGCTGAAAATCAAAGAGGAATTATATGGCGATGAACAGAAGCTGAAGATTACAGTAGTCAAGGCAGATACAGTGAATTATTCTTCGGAAAATAGATACATGCTTGATTTGATTTCTAAGTTTTGTAGGCAGTAA 1887 0.4324 MSVNLTANAIPAIVGGDVNAKPLVQVLDIALISNSNNSKQQRYRLVLSDAVSCHQAMLAAQLNDRVQTGRVKKGSVVQLIDYICSPLHNRKIIVVLNMETIIPDCEIIGNPKSFGDSDVPIQRALHDNNVENSSRKSNNNLTAQNASQNVQNFRPTVQPPYQPPPVYKSRGAIVKNEAPARIIPIASLNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDAIEVGKVYMISKGSLKPAQKNFNHLKNEWEIVLDSNSTVELCPDEDGSIPRQQFSFRPISDIENLDSNSILDVIGVVTSVNPSVPILRKNGMETQRRILNLKDSSGRSVELTLWGEFCNREGQKLQEMVDAGDFPILAVKAGKVSDFSGKSIGSISTTQLFINPDFAEAHSLRDWFDRVGKDSASLSISKDIIPGGAKNEIRKTVSQIKDEGLGRSDKPDWITVKATISFMKTDTFCYTACPLMIGDRQCNKKVTRSGDTRWQCDRCNQEFEECDYRYLLQAQILDHTGLTWVTAFQEAGEEIMGCSAKELYLLKYEHQDDERFGEIIKSRLFNQFIFRLKIKEELYGDEQKLKITVVKADTVNYSSENRYMLDLISKFCRQ* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01818 628 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Rops11g01818 628 Gene3D - 3 115 IPR012340 -
Rops11g01818 628 Pfam OB-fold nucleic acid binding domain 196 278 IPR004365 GO:0003676
Rops11g01818 628 CDD RPA1_DBD_A 184 287 - -
Rops11g01818 628 Pfam Replication factor-A C terminal domain 467 617 IPR013955 -
Rops11g01818 628 FunFam Replication protein A subunit 434 625 - -
Rops11g01818 628 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Rops11g01818 628 SUPERFAMILY Nucleic acid-binding proteins 448 625 IPR012340 -
Rops11g01818 628 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Rops11g01818 628 Gene3D - 180 291 IPR012340 -
Rops11g01818 628 FunFam Replication protein A subunit 4 115 - -
Rops11g01818 628 Pfam Replication protein A OB domain 305 409 IPR031657 -
Rops11g01818 628 Gene3D - 294 432 IPR012340 -
Rops11g01818 628 PANTHER REPLICATION FACTOR A 1, RFA1 195 603 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Rops11g01818 628 FunFam Replication protein A subunit 294 433 - -
Rops11g01818 628 CDD RPA1_DBD_C 451 624 IPR047192 -
Rops11g01818 628 SUPERFAMILY Nucleic acid-binding proteins 299 426 IPR012340 -
Rops11g01818 628 NCBIfam replication factor-a protein 1 (rpa1) 4 624 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Rops11g01818 628 SUPERFAMILY Nucleic acid-binding proteins 181 294 IPR012340 -
Rops11g01818 628 FunFam Replication protein A subunit 181 290 - -
Rops11g01818 628 CDD RPA1_DBD_B 316 423 - -
Rops11g01818 628 Gene3D - 437 626 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01818 Rops-Chr11 29241177 29243915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01818 26 624 Core DNA Replication Machinery Family AT2G06510 70.407 0.0 913
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01818 K07466 - gmx:100792409 1067.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01818 11 29241177 29243915 Rops11g01818 11 29241177 29243915 ECH